Parental gene:

GMCL1, ENSPPYG00000012334

Aliases:None
Description:germ cell-less, spermatogenesis associated 1 [Source:HGNC Symbol;Acc:23843]
Organism:Orangutan (Pongo abelii)
Coordinates:2a:40920612..40973312(-)


>ENSPPYG00000012334
ATGGGATCGTTGAGCAGCCGGGTGCTGCGCCAGCCAAGACCAGCCCTTTGCCAGCAGGCGCAAGGTGCCAGGGCGGGGGG
CTCGGCCCGGAGGCCGGACACTGGAGACGATGCGACGGGCCACGGCTTCTGTTACTGTCCGGGCAGCCACAAGCGCAAGC
GGAGCAGCGGGGCCTTCTGCTACTGTCACCCTGACTCGGAGACGGACGAGGATGAGGAGGAGGGGGACGAGCAGCAGCGG
CTCCTCAACACCCCTCGAAGGAAAAAATTAAAGAGTACATCTAAATATATTTATCAAACATTATTTTTGAATGGTGAAAA
CAGTGACATTAAGATTTGTGCTCTAGGAGAAGAATGGAGCTTACACAAAATATATTTATGTCAATCTGGCTACTTTTCTA
GTATGTTCAGTGGTTCTTGGAAAGAATCCAGCATGAATATTATTGAACTGGAGATTCCTGACCAGAACATTGATGTAGAA
GCACTGCAGGTTGCATTTGGTTCACTGTATCGAGATGATGTCTTGATAAAGCCCAGTCGAGTTGTTGCCATTTTGGCAGC
AGCTTGTTTGCTGCAATTGGACGGTTTAATACAGCAGTGTGGTGAGACAATGAAGGAAACAGTTAATGTGAAAACTGTAT
GTGGCTATTACACGTCAGCAGGGACCTATGGATTAGATTCTGTAAAGAAAAAGTGCCTTGAATGGCTTCTAAACAATTTG
ATGACTCACCAGAATGTTGAACTTTTTAAAGAACTCAGTATAAATGTCATGAAACAGCTCATTGGTTCATCTAACTTATT
TGTGATGCAAGTGGAGATGGATATATACACCGCTCTAAAAAAGTGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGAT
CTTTAAAACAGCTTTTGACAGAAACAGATGTCTGGTTTTCTAAACAGAGGAAAGATTTTGAAGGTATGTCCTTTCTTGAA
ACTGAACAAGGAAAACCATTTGTGTCAGTATTCAGACATTTAAGGTTACAATATATTATCAGTGATCTGGCTTCTGCAAG
AATTATTGAACAAGATGCTATAGTACCTTCAGAATGGCTCTCTTCTGTGTATAAACAGCAGTGGTTTGCTATGCTGCGGG
CAGAACAGGACAGTGAGGTGGGGCCTCAAGAAATCAATAAAGAAGAACTAGAGGGAAATAGCATGAGGTGTGGTAGAAAG
CTTGCCAAAGATGGTGAATACTGCTGGCGTTGGACGGGTTTTAACTTCGGCTTCGACCTACTTGTAACTTACACCAATCG
GTACATCATTTTCAAACGCAATACACTGAATCAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAGCATAGCGT
TTAGATTACGTTTGGCTTCTTTTGATAGTAGTGGAAAACTAATATGTAGTAGAACAACTGGCTATCAAATACTTACACTT
GAAAAGGATCAGGAACAAGTGGTGATGAACTTGGACAGCAGGCTTCTGATCTTCCCTTTATATATCTGCTGTAACTTCTT
GTATATATCACCAGAAAAAAAGAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 4 .42 RPM
SRP007412_cerebellum 12 .65 RPM
SRP007412_heart 4 .27 RPM
SRP007412_kidney 6 .80 RPM
SRP007412_liver 5 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016116 ortholog_one2many 1 retrogene
retro_amel_1915,
Choloepus hoffmanni ENSCHOG00000012306 ortholog_one2many 2 retrogenes
retro_chof_1562, retro_chof_802,
Equus caballus ENSECAG00000016813 ortholog_one2many 2 retrogenes
retro_ecab_1109, retro_ecab_899,
Homo sapiens ENSG00000087338 ortholog_one2one 1 retrogene
retro_hsap_3407,
Loxodonta africana ENSLAFG00000002565 ortholog_one2many 3 retrogenes
retro_lafr_220, retro_lafr_592, retro_lafr_98,
Myotis lucifugus ENSMLUG00000009183 ortholog_one2many 2 retrogenes
retro_mluc_1521, retro_mluc_31,
Macaca mulatta ENSMMUG00000000858 ortholog_one2one 1 retrogene
retro_mmul_98,
Mus musculus ENSMUSG00000001157 ortholog_one2many 1 retrogene
retro_mmus_3665,
Nomascus leucogenys ENSNLEG00000010132 ortholog_one2one 1 retrogene
retro_nleu_2993,
Oryctolagus cuniculus ENSOCUG00000015808 ortholog_one2many 2 retrogenes
retro_ocun_112, retro_ocun_160,
Otolemur garnettii ENSOGAG00000008408 ortholog_one2many 1 retrogene
retro_ogar_151,
Pan troglodytes ENSPTRG00000012021 ortholog_one2one 1 retrogene
retro_ptro_2314,
Pteropus vampyrus ENSPVAG00000001242 ortholog_one2many 3 retrogenes
retro_pvam_1259, retro_pvam_370, retro_pvam_816,
Sorex araneus ENSSARG00000004651 ortholog_one2many 1 retrogene
retro_sara_425,
Sus scrofa ENSSSCG00000008335 ortholog_many2many 1 retrogene
retro_sscr_62,
Ictidomys tridecemlineatus ENSSTOG00000000714 ortholog_one2many 1 retrogene
retro_itri_59,
Tursiops truncatus ENSTTRG00000007493 ortholog_one2many 3 retrogenes
retro_ttru_1039, retro_ttru_1647, retro_ttru_1648,
Vicugna pacos ENSVPAG00000001756 ortholog_one2many 1 retrogene
retro_vpac_617,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_209 93.10 90.10
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Download FASTA sequences of all ENSPPYG00000012334 retrocopies