Parental gene:

GMCL1, ENSPTRG00000012021

Aliases:None
Description:Pan troglodytes germ cell-less, spermatogenesis associated 1 (GMCL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001246396]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2A:70752379..70802737(+)


>ENSPTRG00000012021
ATGGGATCGTTGAGCAGCCGGGTGCTGCGCCAGCCAAGACCAGCCCTTGCCCAGCAGGCGCAGGGTGCCAGGGCGGGGGG
CTCGGCCCGGAGGCCGGACACTGGAGACGATGCGGCGGGCCACGGATTCTGTTACTGTGCGGGCAGCCACAAGCGCAAGC
GGAGCAGGGGGTCCTTCTGCTACTGTCACCCTGACTCGGAGACGGACGAGGATGAGGAGGAGGGGGACGAGCAGCAGCGG
CTCCTCAACACCCCTCGAAGGAAAAAATTAAAGAGTACATCTAAATATATTTATCAAACATTATTTTTGAATGGTGAAAA
CAGTGACATTAAGATTTGTGCTCTAGGAGAAGAATGGAGCTTACACAAAATATATTTATGTCAATCTGGCTACTTTTCTA
GTATGTTCAGTGGTTCTTGGAAAGAATCCAGCATGAATATTATTGAACTGGAGATTCCTGACCAGAACATTGATGTAGAA
GCACTGCAGGTTGCATTTGGTTCACTGTATCGAGATGATGTCTTGATAAAACCCAGTCGAGTTGTTGCCATTTTGGCAGC
AGCTTGTTTGCTGCAGTTGGACGGTTTAATACAGCAGTGTGGTGAGACAATGAAGGAAACAGTTAATGTGAAAACTGTAT
GTGGCTATTACACATCAGCAGGGACCTATGGATTAGATTCTGTAAAGAAAAAGTGCCTTGAATGGCTTCTAAACAATTTG
ATGACTCACCAGAATGTTGAACTTTTTAAAGAACTCAGTATAAATGTCATGAAACAGCTCATTGGTTCATCTAACTTATT
TGTGATGCAAGTGGAGATGGATATATACACTGCTCTAAAAAAGTGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGAT
CTTTAAAACAGCTTTTGACAGAAACAGATGTCTGGTTTTCTAAACAGAGGAAAGATTTTGAAGGTATGGCCTTTCTTGAA
ACTGAACAAGGAAAACCATTTGTGTCAGTATTCAGACATTTAAGGTTACAATATATTATCAGTGATCTGGCTTCTGCAAG
AATTATTGAACAAGATGCTATAGTACCTTCAGAATGGCTCTCTTCTGTGTATAAACAGCAGTGGTTTGCTATGCTGCGGG
CAGAACAGGACAGTGAGGTGGGGCCTCAAGAAATCAATAAAGAAGAACTAGAGGGAAACAGCATGAGGTGTGGTAGAAAG
CTTGCCAAAGATGGTGAATACTGCTGGCGTTGGACAGGTTTCAACTTCGGCTTCGACCTACTTGTAACTTACACCAATCG
ATACATCATTTTCAAACGCAATACACTGAATCAGCCATGTAGCGGATCTGTCAGTTTACAGCCTCGAAGGAGCATAGCAT
TTAGATTACGTTTGGCTTCTTTTGATAGTAGTGGAAAACTAATATGTAGTAGAACAACTGGCTATCAAATACTTACACTT
GAAAAGGATCAGGAACAAGTGGTGATGAACTTGGACAGCAGGCTTCTGATCTTCCCTTTATATATCTGCTGTAACTTCTT
GTATATATCACCAGAAAAAAAGAATTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 5 .83 RPM
SRP007412_cerebellum 8 .57 RPM
SRP007412_heart 3 .58 RPM
SRP007412_kidney 12 .34 RPM
SRP007412_liver 7 .43 RPM
SRP007412_testis 54 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016116 ortholog_one2one 1 retrogene
retro_amel_1915,
Choloepus hoffmanni ENSCHOG00000012306 ortholog_one2one 2 retrogenes
retro_chof_1562, retro_chof_802,
Equus caballus ENSECAG00000016813 ortholog_one2one 2 retrogenes
retro_ecab_1109, retro_ecab_899,
Homo sapiens ENSG00000087338 ortholog_one2one 1 retrogene
retro_hsap_3407,
Loxodonta africana ENSLAFG00000002565 ortholog_one2one 3 retrogenes
retro_lafr_220, retro_lafr_592, retro_lafr_98,
Myotis lucifugus ENSMLUG00000009183 ortholog_one2one 2 retrogenes
retro_mluc_1521, retro_mluc_31,
Macaca mulatta ENSMMUG00000000858 ortholog_one2one 1 retrogene
retro_mmul_98,
Mus musculus ENSMUSG00000001157 ortholog_one2one 1 retrogene
retro_mmus_3665,
Nomascus leucogenys ENSNLEG00000010132 ortholog_one2one 1 retrogene
retro_nleu_2993,
Oryctolagus cuniculus ENSOCUG00000015808 ortholog_one2one 2 retrogenes
retro_ocun_112, retro_ocun_160,
Otolemur garnettii ENSOGAG00000008408 ortholog_one2one 1 retrogene
retro_ogar_151,
Pongo abelii ENSPPYG00000012334 ortholog_one2one 1 retrogene
retro_pabe_209,
Pteropus vampyrus ENSPVAG00000001242 ortholog_one2one 3 retrogenes
retro_pvam_1259, retro_pvam_370, retro_pvam_816,
Sorex araneus ENSSARG00000004651 ortholog_one2one 1 retrogene
retro_sara_425,
Sus scrofa ENSSSCG00000008335 ortholog_one2many 1 retrogene
retro_sscr_62,
Ictidomys tridecemlineatus ENSSTOG00000000714 ortholog_one2one 1 retrogene
retro_itri_59,
Tursiops truncatus ENSTTRG00000007493 ortholog_one2one 3 retrogenes
retro_ttru_1039, retro_ttru_1647, retro_ttru_1648,
Vicugna pacos ENSVPAG00000001756 ortholog_one2one 1 retrogene
retro_vpac_617,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2314 91.62 99.61
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Download FASTA sequences of all ENSPTRG00000012021 retrocopies