Parental gene: | GMCL1, ENSPVAG00000001242 |
| Aliases: | None |
| Description: | germ cell-less, spermatogenesis associated 1 [Source:HGNC Symbol;Acc:23843] |
| Organism: | Megabat (Pteropus vampyrus) |
| Coordinates: | GeneScaffold_2949:609049..648450(+) |
>ENSPVAG00000001242
ATGGGCTCGCTGAGCAGCCGAGTGCTGCGCCACCCGGGGCGAACCCAAGCCCAGCAGGAGCCGGGGTCTGGGGCCGGGGG
CTCGTCCCGGAGGCCGGAGACTGGCGGCGATGCGGCCGGCCACGGCTTCTGTTACTGCCCGGGCAGCCGCAAGCGCAAGC
GGAGCAGCGGGGCCCTCTGCTACTGTCACCCGGACTCCGAGACAGACGAGGATGAGGAGGAAGGGGACGAGCAGCAGCGG
CTCCTCAACACCCCTCGACGGAAGAAATTGAAGAGTACATCCAAATATATCTATCAAACATTATTTTTGAATGGTGAAAA
TAGTGACATTAAGATTTGTGCTTTAGGAGAAGAGTGGAGCTTACACAAAATATATTTATGTCAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCACTGCAGGTTGCATTTGGATCACTGTATCGAGATGATGTCTTAATAAAGCCCAGTCGAGTTATTGCCATTTTGGCAGC
AGCTTGTATGCTACAGTTGGATGGTTTAATACAGCAGTGTGGTGAGACAATGAAGGAAACAATTAATGTGAAAACTGTAT
GTGGCTATTACACATCAGCAGGGACCTATGGATTAGATTCTGTAAAGAAAAAGTGCCTTGAATGGCTTCTAAACAATTTG
ATGACTCACCAGAATGTTGAACTTTTTAAAGAACTCAGTATAAATGTCATGAAACAGCTCATTGGTTCATCTAATTTATT
TGTGATGCAAGTGGAGATGGATGTATACACAGCTCTTAAAAAGTGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGAT
CTTTAAAACAGCTTTTGACTGAAACAGATGTCTGGTTTTCTAAGAGGAGAAAAGATTTTGAAGGTATGACCTTCCTTGAA
ACTGAGCAAGGAAAACCATTTGCGTCGGTGTTCAGACAATTAAGGTTACAGTATATTATAAGTGATTTGGCCTCTGCAAG
AATTATTGAACAAGATTCTCTAGTACCTTCAGAATGGCTGTCCTCTGTGTATAAACAGCAGTGGCTTGCTATGCTCCGGG
CAGAACAAGACAGTGAAGTGGGGCCTCAGGAAATCAATAAAGAAGAACTGGAGGGAAATAGCATGAGGTGTGGTAGAAAA
CTTGCCAAAGATGGTGAATACTGCTGGCGGTGGACAGGTTTTAACTTTGGCTTTGACCTGCTTGTAACTTATACCAATCG
ATACATCATTTTCAAACGCAATACACTGAATCAGCCATGTAGTGGATCTGTCAGTTTACAACCTCGAAGGAGCATAGCAT
TTAGATTACGTTTGGCCTCTTTTGATAGTAGTGGAAAACTAATATGTAGTAGAACAACTGGCTATCAAATACTTACACTT
GAAAAGGATCAGGAACAAGTAGTGATGAACTTGGACAGCAGGCTTCTGATCTTCCCTTTGTATATCTGCTGTAATTTCCT
GTATATATCACCAGAAAAAAACTGA
ATGGGCTCGCTGAGCAGCCGAGTGCTGCGCCACCCGGGGCGAACCCAAGCCCAGCAGGAGCCGGGGTCTGGGGCCGGGGG
CTCGTCCCGGAGGCCGGAGACTGGCGGCGATGCGGCCGGCCACGGCTTCTGTTACTGCCCGGGCAGCCGCAAGCGCAAGC
GGAGCAGCGGGGCCCTCTGCTACTGTCACCCGGACTCCGAGACAGACGAGGATGAGGAGGAAGGGGACGAGCAGCAGCGG
CTCCTCAACACCCCTCGACGGAAGAAATTGAAGAGTACATCCAAATATATCTATCAAACATTATTTTTGAATGGTGAAAA
TAGTGACATTAAGATTTGTGCTTTAGGAGAAGAGTGGAGCTTACACAAAATATATTTATGTCAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCACTGCAGGTTGCATTTGGATCACTGTATCGAGATGATGTCTTAATAAAGCCCAGTCGAGTTATTGCCATTTTGGCAGC
AGCTTGTATGCTACAGTTGGATGGTTTAATACAGCAGTGTGGTGAGACAATGAAGGAAACAATTAATGTGAAAACTGTAT
GTGGCTATTACACATCAGCAGGGACCTATGGATTAGATTCTGTAAAGAAAAAGTGCCTTGAATGGCTTCTAAACAATTTG
ATGACTCACCAGAATGTTGAACTTTTTAAAGAACTCAGTATAAATGTCATGAAACAGCTCATTGGTTCATCTAATTTATT
TGTGATGCAAGTGGAGATGGATGTATACACAGCTCTTAAAAAGTGGATGTTCCTTCAACTTGTGCCTTCTTGGAATGGAT
CTTTAAAACAGCTTTTGACTGAAACAGATGTCTGGTTTTCTAAGAGGAGAAAAGATTTTGAAGGTATGACCTTCCTTGAA
ACTGAGCAAGGAAAACCATTTGCGTCGGTGTTCAGACAATTAAGGTTACAGTATATTATAAGTGATTTGGCCTCTGCAAG
AATTATTGAACAAGATTCTCTAGTACCTTCAGAATGGCTGTCCTCTGTGTATAAACAGCAGTGGCTTGCTATGCTCCGGG
CAGAACAAGACAGTGAAGTGGGGCCTCAGGAAATCAATAAAGAAGAACTGGAGGGAAATAGCATGAGGTGTGGTAGAAAA
CTTGCCAAAGATGGTGAATACTGCTGGCGGTGGACAGGTTTTAACTTTGGCTTTGACCTGCTTGTAACTTATACCAATCG
ATACATCATTTTCAAACGCAATACACTGAATCAGCCATGTAGTGGATCTGTCAGTTTACAACCTCGAAGGAGCATAGCAT
TTAGATTACGTTTGGCCTCTTTTGATAGTAGTGGAAAACTAATATGTAGTAGAACAACTGGCTATCAAATACTTACACTT
GAAAAGGATCAGGAACAAGTAGTGATGAACTTGGACAGCAGGCTTCTGATCTTCCCTTTGTATATCTGCTGTAATTTCCT
GTATATATCACCAGAAAAAAACTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016116 | ortholog_one2one | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000012306 | ortholog_one2one | 2 retrogenes | |
| Equus caballus | ENSECAG00000016813 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000087338 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000002565 | ortholog_one2one | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000009183 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000000858 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000001157 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000010132 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000015808 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008408 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000012334 | ortholog_one2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012021 | ortholog_one2one | 1 retrogene | |
| Sorex araneus | ENSSARG00000004651 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000008335 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000000714 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000007493 | ortholog_one2one | 3 retrogenes | |
| Vicugna pacos | ENSVPAG00000001756 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pvam_370 | 59.38 | 68.29 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pvam_816 | 56.41 | 68.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pvam_1259 | 52.21 | 52.92 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPVAG00000001242 retrocopies