Parental gene:

ENSSSCG00000008335

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:3:75967017..76057423(-)


>ENSSSCG00000008335
ATGGGCTCGCTGAGCAGCCGAGTGCTGCGCCACCCGGGGCGAGCCGGACCCCAGCAGGAGCCGGGTTCTGGGACGGGGGC
CTCGGCCCGGAGGCCGGAGACTGGGGGCGACGCGGCCGGCCACGGCTTCTGTTACTGTCCGGGCAGCCGCAAGCGCAAGA
GGAGCAGCGGGGCTTTTTGCTACTGTCACCCCGACTCCGAGACAGACGAGGATGAGGAGGAGGGGGACGAGCAGCAGCGG
CTCCTCAACACCCCTCGAAGCAGGAAAAAATTGAAGAGTACATCCAAATATATTTATCAAACATTATTTTTAAACGGTGA
AAACAGTGACATTAAGATTTGTGCTCTAGGGGAAGAGTGGAGCTTACACAAAATATATTTATGTCAATCTGGCTACTTTT
CTAGTATGTTCAGCGGTTCTTGGAAAGAATCCAGCATGAATACTATTGAATTGGAGATTCCTGACCAGAATATTGACATA
GAAGCACTGCAAGTGGCATTTGGGTCACTGTATCGTGATGATGTCTTAATAAAGCCCAGTCGAGTCATTGCCATTTTGGC
AGCAGCTTGTATGCTACAGTTGGATGGTTTAATACAGCAGTGTGGTGAGACAATGAAGGAAACAATTAATGTGAAAACTG
TATGTGGCTATTACACATCAGCAGGGACCTATGGATTAGATTCTGTAAAGAAAAAGTGCCTTGAATGGCTTCTAAACAAT
TTGATGACTCACCAGAATGTTGAACTTTTTAAAGAACTCAGTATAAATGTCATGAAACAACTCATTGGTTCATCTAACTT
ATTTGTGATGCAAGTGGAGATGGATGTTTATACAGCCCTTGTGAGCAAATGGATGTTCCTTCAACTTGTGCCTTCTTGGA
ATGGGTCTTTAAAACAGCTTCTGACTGAAACAGATGTCTGGTTTTCTAAGAGGAAAAAAGATTTTGAAGGTATGACCTTC
CTTGAAACTGAGCAAGGAAAACCATTTGTGTCAGTATTCAGACATTTAAGGTTACAGTATATTATCAGTGATTTGGCCTC
TGCAAGAATTATTGAACAAGATTCTCTGGTACCTTCAGAATGGCTGTCTGCTGTGTATAAACAGCAGTGGCTTGCTATGC
TCCGGGCAGAACAAGACAGTGAGGTGGGGCCTCAAGAAATCAATAAAGAAGAACTAGAGGGAAATAGCATGAGATGTGGT
AGAAAGCTTGCCAAAGATGGTGAATACTGCTGGCGGTGGACAGGTTTTAACTTCGGCTTTGACCTGCTGGTAACTTACAC
CAATCGATACATCATTTTTAAACGCAACACACTGAATCAGCCATGTAGTGGATCTGTCAGTTTACAACCTCGAAGGAGCA
TAGCATTTAGATTACGTTTGGCCTCTTTTGATAGCAGTGGAAAACTAATATGTAGTAGAACAACTGGCTATCAAATACTT
ACACTTGAAAAGGATCAGGAACAAGTAGTGATGAACTTGGACAGCAGGCTTCTGATCTTCCCTTTATATATCTGTTGTAA
CTTCCTGTATATATCGCCTGAAAAAAGAACTGAAAATAATCGTCATCCAGAAAATCCAGAAAACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 4 .11 RPM
SRP014902_testis 12 .16 RPM
SRP018288_heart 5 .50 RPM
SRP018288_kidney 25 .91 RPM
SRP018288_liver 14 .55 RPM
SRP018288_lung 23 .32 RPM
SRP018856_adipose 6 .65 RPM
SRP035408_brain 2 .92 RPM
SRP035408_liver 8 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016116 ortholog_one2many 1 retrogene
retro_amel_1915,
Choloepus hoffmanni ENSCHOG00000012306 ortholog_one2many 2 retrogenes
retro_chof_1562, retro_chof_802,
Equus caballus ENSECAG00000016813 ortholog_one2many 2 retrogenes
retro_ecab_1109, retro_ecab_899,
Homo sapiens ENSG00000087338 ortholog_one2many 1 retrogene
retro_hsap_3407,
Loxodonta africana ENSLAFG00000002565 ortholog_one2many 3 retrogenes
retro_lafr_220, retro_lafr_592, retro_lafr_98,
Myotis lucifugus ENSMLUG00000009183 ortholog_one2many 2 retrogenes
retro_mluc_1521, retro_mluc_31,
Macaca mulatta ENSMMUG00000000858 ortholog_many2many 1 retrogene
retro_mmul_98,
Mus musculus ENSMUSG00000001157 ortholog_one2many 1 retrogene
retro_mmus_3665,
Nomascus leucogenys ENSNLEG00000010132 ortholog_one2many 1 retrogene
retro_nleu_2993,
Oryctolagus cuniculus ENSOCUG00000015808 ortholog_one2many 2 retrogenes
retro_ocun_112, retro_ocun_160,
Otolemur garnettii ENSOGAG00000008408 ortholog_one2many 1 retrogene
retro_ogar_151,
Pongo abelii ENSPPYG00000012334 ortholog_many2many 1 retrogene
retro_pabe_209,
Pan troglodytes ENSPTRG00000012021 ortholog_one2many 1 retrogene
retro_ptro_2314,
Pteropus vampyrus ENSPVAG00000001242 ortholog_one2many 3 retrogenes
retro_pvam_1259, retro_pvam_370, retro_pvam_816,
Sorex araneus ENSSARG00000004651 ortholog_one2many 1 retrogene
retro_sara_425,
Ictidomys tridecemlineatus ENSSTOG00000000714 ortholog_one2many 1 retrogene
retro_itri_59,
Tursiops truncatus ENSTTRG00000007493 ortholog_one2many 3 retrogenes
retro_ttru_1039, retro_ttru_1647, retro_ttru_1648,
Vicugna pacos ENSVPAG00000001756 ortholog_one2many 1 retrogene
retro_vpac_617,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_62 59.35 87.69
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Download FASTA sequences of all ENSSSCG00000008335 retrocopies