RetrogeneDB ID: | retro_mmul_1746 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 4:3972481..3973378(+) | ||
Located in intron of: | ENSMMUG00000014020 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4209 | ||
Ensembl ID: | ENSMMUG00000011476 | ||
Aliases: | None | ||
Description: | sorting nexin-5 [Source:RefSeq peptide;Acc:NP_001244488] |
Percent Identity: | 89. % |
Parental protein coverage: | 74.26 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHAILS |
L.IP.APTKPDFDGP.E.MQKLGEGEGSMTKEEFAKM.QELEAEYL.VFKKTVSSHEVFLQ.LSSH..LS | |
Retrocopy | LQIPTAPTKPDFDGPQETMQKLGEGEGSMTKEEFAKMIQELEAEYLDVFKKTVSSHEVFLQWLSSHPVLS |
Parental | KDRNFHVFLEYDQDLSVRRKNTKEMFGGFFKSVVKSADEVLFTGVKEVDDFFEQEKNFLINYYNRIKDSC |
KDR.FHVFLEYDQDLSVR.KNTK.MFGGFFKSVVKSA.EVLFTGVKEVDDFFEQEKNFLINYYN.IKDSC | |
Retrocopy | KDRHFHVFLEYDQDLSVRWKNTKGMFGGFFKSVVKSA-EVLFTGVKEVDDFFEQEKNFLINYYNSIKDSC |
Parental | VKADKMTRSHKNVADDYIHTAACLHSLALEEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRY |
VKADKMTRSHKNV.DDYIHTAACLH.LALEEPTVIKKY.LKVAELFEKLR.VEG.VSSDEDLKLTELL.Y | |
Retrocopy | VKADKMTRSHKNVTDDYIHTAACLHNLALEEPTVIKKYPLKVAELFEKLRRVEG*VSSDEDLKLTELL*Y |
Parental | YMLNIEAAKDLLYRRTKALIDYENSNKALDKARLKSKDVKLAEAHQQECCQKFEQLSESAKEELINFKRK |
Y.LNIE.AKDLLYRRTKALIDY.NSN..LDK.RLKSKD.KLAEAHQQECCQKFEQ.S.S.KEELINFKRK | |
Retrocopy | YTLNIEVAKDLLYRRTKALIDYDNSNESLDKVRLKSKDIKLAEAHQQECCQKFEQPSKSPKEELINFKRK |
Parental | RVAAFRKNLIEMSELEIKHA |
.VAAFRKNL.E.SELEIKHA | |
Retrocopy | GVAAFRKNLLETSELEIKHA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 37 .99 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 32 .05 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .35 RPM |
SRP007412_heart | 0 .00 RPM | 32 .56 RPM |
SRP007412_kidney | 0 .00 RPM | 70 .77 RPM |
SRP007412_liver | 0 .00 RPM | 30 .91 RPM |
SRP007412_testis | 0 .00 RPM | 15 .49 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010128 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000004947 | 2 retrocopies | |
Homo sapiens | ENSG00000089006 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000008953 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009110 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011476 | 2 retrocopies |
retro_mmul_1746 , retro_mmul_832,
|
Macaca mulatta | ENSMMUG00000019017 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009714 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017072 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006157 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010730 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000013278 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000007088 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015416 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016432 | 1 retrocopy |