Parental gene:

SNX5, ENSSSCG00000007088

Aliases:None
Description:sorting nexin 5 [Source:HGNC Symbol;Acc:14969]
Organism:Pig (Sus scrofa)
Coordinates:17:29776938..29797245(-)


>ENSSSCG00000007088
ATAGAAGGGTGCCCCCTACTCCCTATACCTTCCATCCTGATGATTTATTTATTTAGTAGCAAGCCCACTGGCAAAGAGCT
AAGATCTGTATCAGTGGACCTGAATGTTGATCCTTCGCTTCAGATCGACATACCTGATGCACTCAGTGAGAGAGATAAGG
TCAAATTTACAGTACACACCAAGACCACGCTGCCCACGTTTCAGAGTCCAGAGTTTTCTGTTACAAGGCAACATGAAGAC
TTTGTGTGGCTACATGACACTCTTATTGAAACTACAGACTATGCTGGGCTTATTATTCCACCTGCACCTACGAAGCCTGA
CTTTGATGGGCCTCGAGAAAAGATGCAAAAACTGGGAGAGGGTGAAGGGTCAATGACCAAAGAAGAATTTGCCAAGATGA
AGCAAGAGCTGGAAGCTGAGTATCTTGCTGTCTTTAAGAAGACTGTGTCCTCTCATGAGGTCTTCCTTCAGCGGCTCTCC
TCTCATCCTGTTCTCAGTAAAGATCGAAACTTTCATGTTTTCCTGGAATATGACCAAGATCTAAGTGTTAGGAGGAAAAA
TACCAAAGAGATGTTTGGTGGCTTTTTCAAAAGTGTGGTGAAAAGTGCTGATGAAGTCCTTTTTTCAGGAGTTAAGGAGG
TAGATGATTTCTTTGAACAAGAGAAGAATTTTCTCATTAACTATTATAATAGAATCAAGGATTCATGTGCAAAGGCTGAC
AGAATGACCAGATCTCATAAAAATGTTGCTGACGACTATATCCACACTGCAGCTTGCCTGCATAGTCTCGCTTCAGAAGA
GCCCACGGTCATCAAAAAGTACCTATTGAAGGTTGCTGAGCTATTTGAAAAACTTAGGAAAGTAGAGAGTCGGGTCTCCT
CAGATGAAGACTTGAAGCTGACAGAGCTCCTCCGGTACTACATGCTCAACATTGAGGCTGCTAAGGATCTCTTATACAGA
CGCACCAAAGCCCTCATTGACTATGAGAATTCAAACAAAGCATTGGATAAGGCCCGGTTAAAAAGCAGAGACATCAAGTT
GGCTGAGGCACACCAGCAAGAATGCTGCCAGAAATTTGAACAGCTTTCTGAATCTGCAAAAGAAGTAGAGCTGATCAATT
TCAAACGAAAGAGAGTGGCGGCATTTAGAAAGAATCTAATTGAAATGTCAGAACTGGAAATAAAGCATGCCAGGAACAAT
GTCTCCCTCCTGCAGAGCTGCATTGACTTGTTCAAGAACAACTGA

Library Parental gene expression (RPM)
SRP014902_placenta 43 .14 RPM
SRP014902_testis 106 .51 RPM
SRP018288_heart 47 .86 RPM
SRP018288_kidney 213 .46 RPM
SRP018288_liver 99 .94 RPM
SRP018288_lung 49 .28 RPM
SRP018856_adipose 68 .30 RPM
SRP035408_brain 53 .10 RPM
SRP035408_liver 122 .65 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010128 ortholog_one2one 2 retrogenes
retro_chof_1478, retro_chof_2166,
Callithrix jacchus ENSCJAG00000004947 ortholog_one2one 2 retrogenes
retro_cjac_2192, retro_cjac_3243,
Homo sapiens ENSG00000089006 ortholog_one2one 2 retrogenes
retro_hsap_1051, retro_hsap_2945,
Gorilla gorilla ENSGGOG00000008953 ortholog_one2one 1 retrogene
retro_ggor_829,
Macropus eugenii ENSMEUG00000009110 ortholog_one2one 1 retrogene
retro_meug_475,
Macaca mulatta ENSMMUG00000011476 ortholog_one2one 2 retrogenes
retro_mmul_1746, retro_mmul_832,
Nomascus leucogenys ENSNLEG00000009714 ortholog_one2one 1 retrogene
retro_nleu_2071,
Oryctolagus cuniculus ENSOCUG00000017072 ortholog_one2one 1 retrogene
retro_ocun_1323,
Otolemur garnettii ENSOGAG00000006157 ortholog_one2many 1 retrogene
retro_ogar_1203,
Pongo abelii ENSPPYG00000010730 ortholog_one2one 2 retrogenes
retro_pabe_2442, retro_pabe_877,
Pan troglodytes ENSPTRG00000013278 ortholog_one2one 2 retrogenes
retro_ptro_2052, retro_ptro_717,
Ictidomys tridecemlineatus ENSSTOG00000015416 ortholog_one2many 1 retrogene
retro_itri_1176,
Tursiops truncatus ENSTTRG00000016432 ortholog_one2one 1 retrogene
retro_ttru_410,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_593 92.09 93.96
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Download FASTA sequences of all ENSSSCG00000007088 retrocopies