Parental gene:

SNX5, ENSCHOG00000010128

Aliases:None
Description:sorting nexin 5 [Source:HGNC Symbol;Acc:14969]
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_18844:3072..13962(+)


>ENSCHOG00000010128
CTGAGATCTGTGTCTGTGGACCTGAATATTGATCCCTCGCTTCAGATTGACATACCTGATGCACTCAGTGAGAGAGATAA
GGTCAAATTTACAGTGCACACTAAGACCACACTGTCCACATTTCAGAGCCCAGAGTTTTCTGTTACGAGGCAACACAAAG
ACTTTGTGTGGCTACATGACACTCTTAATGAAACGACAGACTATGCTGGTATTCCACCTGTTCCCACAAGACCTGACTTT
GATGGCCCTCGAGAGAAGATGCAGAAACTGGGAGAGGGTGAAGGGTCTATGACCAAAGAAGAGTTTGCCAAGATGAAGCA
AGAACTGGAAGCTGAATACCTTGCTGTCTTTAAGAAGACTGTATCCTCCCATGAGGTCTTTCTTCAGCGGCTTGCTTCTC
ACCCTGTTCTCAGTAAAGATCGCAACTTTCATGTTTTCCTGGAATATGATCAGGATCTAAGTGTTAGGCGGAAAAATACC
AAAGAGATGTTTGGTGGCTTTTTCAAAAGTGTGGTGAAAAGCGCCGATGAAGTCCTTTTTTCTGGAGTTAAGGAGGTGGA
TGACTTCTTTGAGCAAGAGAAGAATTTCCTTATTAACTATTACAATAAGATCAAGGACTCATGTGCAAAAGCTGACAAAA
TGACCAGATCTCATAAAAATGTTGCAGATGACTATATCCACACTGCTGCCTGCTTGCATAGCCTGGCTTTAGAAGAGCCC
ACAGTCATCAAAACATTGGAGCTTCATGAGCTATTTGAAAAACTTAGGAAAGTAGAGAGTCGAGTCTCTTCAGATGAAGA
TTTAAAGCTGACTGAGCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTCCTATACAGACGTACCAAAG
CTCTTATTGACTATGAAAACTCCAACAAGGCTCTGGATAAGGCACGGTTAAAAAGCAGAGATGTCAAGTTGGCTGAGGCA
AACCAACAGGAGTGCTGCCAAAAATTTGAACAGCTTTCTGAATCTGCAAAAGAAGAGCTGATAAGTTTCAAACGGAAGAG
AGTGGCAGCATTTAGAAAGAATCTAATTGAAATGTCTGAATTGGAAATAAAACATGCTAGGAACAATGTCTCCCTTTTGC
AAAGCTGCATTGACTTGTTCAAAAACAACTGA

Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000707 within_species_paralog 2 retrogenes
retro_chof_2390, retro_chof_265,
Callithrix jacchus ENSCJAG00000004947 ortholog_one2one 2 retrogenes
retro_cjac_2192, retro_cjac_3243,
Homo sapiens ENSG00000089006 ortholog_one2one 2 retrogenes
retro_hsap_1051, retro_hsap_2945,
Gorilla gorilla ENSGGOG00000008953 ortholog_one2one 1 retrogene
retro_ggor_829,
Macropus eugenii ENSMEUG00000009110 ortholog_one2one 1 retrogene
retro_meug_475,
Macaca mulatta ENSMMUG00000011476 ortholog_one2one 2 retrogenes
retro_mmul_1746, retro_mmul_832,
Nomascus leucogenys ENSNLEG00000009714 ortholog_one2one 1 retrogene
retro_nleu_2071,
Oryctolagus cuniculus ENSOCUG00000017072 ortholog_one2one 1 retrogene
retro_ocun_1323,
Otolemur garnettii ENSOGAG00000006157 ortholog_one2many 1 retrogene
retro_ogar_1203,
Pongo abelii ENSPPYG00000010730 ortholog_one2one 2 retrogenes
retro_pabe_2442, retro_pabe_877,
Pan troglodytes ENSPTRG00000013278 ortholog_one2one 2 retrogenes
retro_ptro_2052, retro_ptro_717,
Sus scrofa ENSSSCG00000007088 ortholog_one2one 1 retrogene
retro_sscr_593,
Ictidomys tridecemlineatus ENSSTOG00000015416 ortholog_one2many 1 retrogene
retro_itri_1176,
Tursiops truncatus ENSTTRG00000016432 ortholog_one2one 1 retrogene
retro_ttru_410,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_chof_1478 59.35 95.04
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2. retro_chof_2166 59.55 80.16
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Download FASTA sequences of all ENSCHOG00000010128 retrocopies