Parental gene:

MMU.4209, ENSMMUG00000011476

Aliases:None
Description:sorting nexin-5 [Source:RefSeq peptide;Acc:NP_001244488]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:10:51263742..51290460(-)


>ENSMMUG00000011476
ATGGCCGCGGTTCCCGAGTTGCTGCAGCAGCAGGAGGAGGACCGCAGCAAGCTGAGATCTGTATCTGTGGACCTGAATGT
TGATCCCTCGCTTCAGATTGACATACCTGATGCACTCAGTGAGAGAGATAAAGTCAAATTTACAGTGCACACAAAGACCA
CATTGCCCACGTTTCAGAGCCCAGAGTTTTCTGTCACAAGGCAACATGAAGACTTTGTGTGGCTACATGACACTCTTATT
GAAACAACAGACTATGCTGGGCTTATTATTCCACCTGCTCCTACGAAGCCCGACTTTGATGGTCCTCGAGAGAAGATGCA
GAAACTGGGAGAAGGTGAAGGGTCTATGACCAAAGAGGAATTTGCCAAGATGAAACAAGAACTGGAAGCTGAGTATCTCG
CTGTTTTTAAGAAGACTGTCTCCTCCCATGAAGTCTTTCTTCAGCGGCTTTCTTCTCACGCTATTCTTAGTAAAGATCGC
AACTTTCATGTTTTCCTGGAATATGATCAGGATCTAAGTGTGAGGCGGAAGAATACTAAAGAGATGTTTGGTGGCTTCTT
CAAAAGTGTGGTGAAAAGTGCTGATGAAGTCCTTTTTACCGGAGTTAAGGAGGTAGATGACTTCTTTGAGCAAGAGAAGA
ACTTCCTTATTAACTATTACAATAGGATCAAAGATTCTTGTGTGAAAGCTGACAAAATGACCAGATCTCATAAAAATGTT
GCCGATGACTATATCCACACTGCAGCCTGCTTACATAGCCTGGCTTTAGAAGAGCCCACAGTCATCAAAAAGTACCTGTT
GAAGGTTGCTGAGCTATTTGAAAAGCTTAGGAAAGTAGAGGGTCGAGTGTCATCAGATGAAGATTTGAAGCTAACAGAGC
TCCTCCGATACTACATGCTCAACATCGAAGCTGCTAAGGATCTCTTATACAGACGCACCAAAGCCCTCATTGACTATGAA
AACTCAAACAAAGCTCTGGATAAAGCCCGGTTAAAGAGCAAAGACGTCAAGTTGGCTGAGGCACACCAGCAGGAGTGCTG
CCAGAAATTTGAACAACTTTCCGAATCTGCAAAAGAAGAACTGATAAATTTCAAACGGAAGAGAGTGGCAGCATTTAGAA
AGAATCTAATTGAAATGTCTGAACTGGAAATAAAACATGCCAGGAACAATGTCTCCCTTTTGCAGAGCTGTATTGACTTG
TTCAAGAATAACTGA

Library Parental gene expression (RPM)
SRP007412_brain 37 .99 RPM
SRP007412_brain_prefrontal_cortex 32 .05 RPM
SRP007412_cerebellum 30 .35 RPM
SRP007412_heart 32 .56 RPM
SRP007412_kidney 70 .77 RPM
SRP007412_liver 30 .91 RPM
SRP007412_testis 15 .49 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000010128 ortholog_one2one 2 retrogenes
retro_chof_1478, retro_chof_2166,
Callithrix jacchus ENSCJAG00000004947 ortholog_one2one 2 retrogenes
retro_cjac_2192, retro_cjac_3243,
Homo sapiens ENSG00000089006 ortholog_one2one 2 retrogenes
retro_hsap_1051, retro_hsap_2945,
Gorilla gorilla ENSGGOG00000008953 ortholog_one2one 1 retrogene
retro_ggor_829,
Macropus eugenii ENSMEUG00000009110 ortholog_one2one 1 retrogene
retro_meug_475,
Macaca mulatta ENSMMUG00000019017 within_species_paralog 1 retrogene
retro_mmul_1395,
Nomascus leucogenys ENSNLEG00000009714 ortholog_one2one 1 retrogene
retro_nleu_2071,
Oryctolagus cuniculus ENSOCUG00000017072 ortholog_one2one 1 retrogene
retro_ocun_1323,
Otolemur garnettii ENSOGAG00000006157 ortholog_one2many 1 retrogene
retro_ogar_1203,
Pongo abelii ENSPPYG00000010730 ortholog_one2one 2 retrogenes
retro_pabe_2442, retro_pabe_877,
Pan troglodytes ENSPTRG00000013278 ortholog_one2one 2 retrogenes
retro_ptro_2052, retro_ptro_717,
Sus scrofa ENSSSCG00000007088 ortholog_one2one 1 retrogene
retro_sscr_593,
Ictidomys tridecemlineatus ENSSTOG00000015416 ortholog_one2many 1 retrogene
retro_itri_1176,
Tursiops truncatus ENSTTRG00000016432 ortholog_one2one 1 retrogene
retro_ttru_410,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_832 88.12 78.47
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2. retro_mmul_1746 89.00 74.26
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Download FASTA sequences of all ENSMMUG00000011476 retrocopies