RetrogeneDB ID: | retro_mmul_185 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:77575349..77576213(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000012603 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM122B | ||
Ensembl ID: | ENSMMUG00000016948 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.44 % |
Parental protein coverage: | 61.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LAPACSPRPLEPNTSYGGT-LRRSSSAPLIHGLSDLSQVFQPYTLRTRRNSTTIMSRHSLLLSSSPNRIP |
L.P.....P.E...S.GG..LRRS.SAPLIHGLSD.S.VFQ......RRNSTT..SRH.LLL..SP.R.. | |
Retrocopy | LPPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARRNSTTFPSRHGLLLPASPVRMH |
Parental | SSRLHQIKREEGLDMMNRETAHEREMQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSP |
SSRLHQIK.EEG.D..NRET.HERE.QTAMQIS.SW.ES.SLSD.D....EK..SPKRIDF.PVSPAPSP | |
Retrocopy | SSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEESFSLSDNDV---EKSASPKRIDFIPVSPAPSP |
Parental | TRGFGKKYF |
TRG.GK..F | |
Retrocopy | TRGIGKQCF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 9 .86 RPM | 12 .33 RPM |
SRP007412_brain_prefrontal_cortex | 9 .84 RPM | 12 .06 RPM |
SRP007412_cerebellum | 6 .97 RPM | 8 .72 RPM |
SRP007412_heart | 5 .18 RPM | 2 .94 RPM |
SRP007412_kidney | 5 .99 RPM | 5 .28 RPM |
SRP007412_liver | 4 .87 RPM | 1 .11 RPM |
SRP007412_testis | 13 .80 RPM | 6 .94 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_594 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001311 | 1 retrocopy | |
Bos taurus | ENSBTAG00000001886 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018882 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004313 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011218 | 1 retrocopy | |
Equus caballus | ENSECAG00000018643 | 1 retrocopy | |
Felis catus | ENSFCAG00000024842 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007988 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016948 | 1 retrocopy |
retro_mmul_185 ,
|
Mustela putorius furo | ENSMPUG00000012690 | 1 retrocopy | |
Mus musculus | ENSMUSG00000036022 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050146 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012685 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006261 | 1 retrocopy |