RetrogeneDB ID: | retro_ecab_91 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 23:21876109..21876973(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000003116 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM122B | ||
Ensembl ID: | ENSECAG00000018643 | ||
Aliases: | None | ||
Description: | family with sequence similarity 122B [Source:HGNC Symbol;Acc:30490] |
Percent Identity: | 65.91 % |
Parental protein coverage: | 94.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SDGATLRRSNSAPLIHGLSDLSQVFQPYTFRTRRNSTTIMSRHNLLLSSSPNRVPSSRLHQIKREEGMDM |
S.G..LRRSNSAPLIHGLSD.S.VFQ......RRNSTT...RH.LLL..SP.R..SSRLHQIK.EEGMD. | |
Retrocopy | SGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARRNSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDL |
Parental | MNRETAHEREVQTAMQISQSWDESLSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCFSPSLQM |
.NRET.HEREVQ.AMQIS.SW.ES.SLSD.D....EK..SPKRIDF.PVSPAPSPTRG.GKQCFSPSLQ. | |
Retrocopy | INRETVHEREVQNAMQISHSWEESFSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQS |
Parental | FVSNSEAATKVPASETRLWKEGRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPEAAQLS |
FVS..........S.T......RSQSP..CIRPSVLGPLKRK.EMETE.QPKR.FQG.T.MLS...AQLS | |
Retrocopy | FVSSNGLPPSPIPSPTTRFSTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITTMLSSDVAQLS |
Parental | DLSSC--SDILDGSSSSSGLSSDSLAKGSTTAESPVACSNSCSPFILMDDLSPK |
D...C..SD.LDG.SSS.G.S..S.AK.STT..SPV......SPFI..D.LS.K | |
Retrocopy | DPGVCVSSDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQAASPFIPVDELSSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 7 .32 RPM | 2 .77 RPM |
SRP021940_cerebellum | 11 .01 RPM | 5 .19 RPM |
SRP021940_embryo | 10 .20 RPM | 8 .29 RPM |
SRP021940_placental_villous | 7 .70 RPM | 54 .75 RPM |
SRP021940_synovial_membrane | 8 .15 RPM | 2 .99 RPM |
SRP021940_testis | 6 .78 RPM | 1 .28 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001311 | 1 retrocopy | |
Bos taurus | ENSBTAG00000001886 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018882 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004313 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011218 | 1 retrocopy | |
Equus caballus | ENSECAG00000018643 | 1 retrocopy |
retro_ecab_91 ,
|
Felis catus | ENSFCAG00000024842 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007988 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016948 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012690 | 1 retrocopy | |
Mus musculus | ENSMUSG00000036022 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050146 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000012685 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000006261 | 1 retrocopy |