Parental gene:

FAM122B, ENSSSCG00000012685

Aliases:None
Description:family with sequence similarity 122B [Source:HGNC Symbol;Acc:30490]
Organism:Pig (Sus scrofa)
Coordinates:X:126461836..126482607(-)


>ENSSSCG00000012685
ATGGCTCAGGAAAAAATGGAGCTGGACTTTGAGCCTGACACATCTGATGGGGGCACCCTGAGGAGATCCAACAGCGCTCC
CCTGATCCATGGGCTCAGTGACCTCTCGCAGGTTTTTCAACCTTACACATTTAGAACCCGGAGGAATAGCACAATCATCA
TGAGCCGGCCCGGCTTGTTGCTGTCATCCTCACCTAATCGTATTCCTAGCAGCAGACTGCATCAAATCAAAAGGGAGGAA
GGCATGGATATGATGAACCGAGAAACGGCGCATGAAAGAGAAATGCAGAGCGCCATGCAGATAAGCCAATCATGGGATGA
AAGTTTGAGCCTGAGTGATAGTGACTTCGACAAGGAGAAATTGTATTCTCCGAAAAGGATTGACTTCACTCCTGTTTCTC
CTGCACCATCACCCACCAGAGGGCTTGGAAAGCAGTGTTTTTCACCATCCTTACAAATGTTTGTGAGCAGCAGTGGGCTA
CCCCCAAGTCCTGTTTCTAGTCCAAGACGCTTTTCCAGGAGAAGTCAGAGTCCAGTCAAGTGCATTAGGCCCAGTGTTCT
TGGTCCTCTTAAAAGAAAAGGTGAGATGGAGACCGAGAGCCAGCCCAAGAGGCTCTTCCAAGGCACCACCAGTATGCTGT
CTCCAGAGGCTACCCAATTGTCTGATCTCAGTTCATGGTGGTGTTATCAAGGAGAAGAAATCCCTGCCTTGACCAGATGT
GTGGAGCATCTACAAATGAATGAATAA

Library Parental gene expression (RPM)
SRP014902_placenta 117 .07 RPM
SRP014902_testis 29 .99 RPM
SRP018288_heart 7 .26 RPM
SRP018288_kidney 13 .99 RPM
SRP018288_liver 7 .52 RPM
SRP018288_lung 26 .37 RPM
SRP018856_adipose 23 .07 RPM
SRP035408_brain 4 .61 RPM
SRP035408_liver 6 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001311 ortholog_one2one 1 retrogene
retro_amel_105,
Bos taurus ENSBTAG00000001886 ortholog_one2one 1 retrogene
retro_btau_103,
Canis familiaris ENSCAFG00000018882 ortholog_one2one 1 retrogene
retro_cfam_181,
Callithrix jacchus ENSCJAG00000004313 ortholog_one2one 1 retrogene
retro_cjac_594,
Cavia porcellus ENSCPOG00000011218 ortholog_one2one 1 retrogene
retro_cpor_80,
Equus caballus ENSECAG00000018643 ortholog_one2one 1 retrogene
retro_ecab_91,
Felis catus ENSFCAG00000024842 ortholog_one2one 1 retrogene
retro_fcat_1575,
Myotis lucifugus ENSMLUG00000007988 ortholog_one2one 1 retrogene
retro_mluc_382,
Macaca mulatta ENSMMUG00000016948 ortholog_one2one 1 retrogene
retro_mmul_185,
Mustela putorius furo ENSMPUG00000012690 ortholog_one2one 1 retrogene
retro_mputfur_64,
Mus musculus ENSMUSG00000036022 ortholog_one2one 1 retrogene
retro_mmus_22,
Rattus norvegicus ENSRNOG00000050146 ortholog_one2many 1 retrogene
retro_rnor_651,
Ictidomys tridecemlineatus ENSSTOG00000006261 ortholog_one2one 1 retrogene
retro_itri_61,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_60 73.08 83.06
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Download FASTA sequences of all ENSSSCG00000012685 retrocopies