RetrogeneDB ID: | retro_mmul_2350 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:73095539..73095939(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.4043 | ||
Ensembl ID: | ENSMMUG00000017928 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L13 [Source:UniProtKB/TrEMBL;Acc:F6XL94] |
Percent Identity: | 72.79 % |
Parental protein coverage: | 63.51 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | SGPIRPIVRCPTVRYHTKVRAGRGFSLE-ELRVAGVHKKVARTIGISVDPRRRNKSTES-LQANVQRLKE |
SGPI.PIVRC.TVRYHT.V.AG.GFS...ELRV.G.HKKVA...GISVDPRR.NKSTES.L........E | |
Retrocopy | SGPIWPIVRCCTVRYHTRVHAGQGFSMA<ELRVVGIHKKVAQNTGISVDPRR*NKSTES<LASQCAVPME |
Parental | YRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMA |
.RSKLILFPRKP.APKKGDSSAEELKL...LTG...PI.NVYKKEKA.VITEEEKN.KAFA.L..A | |
Retrocopy | CRSKLILFPRKPLAPKKGDSSAEELKLPQ*LTGLLRPIQNVYKKEKAQVITEEEKNSKAFACLHVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 55 .35 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 178 .57 RPM |
SRP007412_cerebellum | 0 .00 RPM | 56 .18 RPM |
SRP007412_heart | 0 .00 RPM | 132 .96 RPM |
SRP007412_kidney | 0 .00 RPM | 111 .85 RPM |
SRP007412_liver | 0 .00 RPM | 241 .58 RPM |
SRP007412_testis | 0 .00 RPM | 98 .68 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4074 |
Pan troglodytes | retro_ptro_2761 |
Gorilla gorilla | retro_ggor_2732 |