RetrogeneDB ID: | retro_mmul_916 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 12:49970656..49970988(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSMMUG00000005734 | ||
Aliases: | None | ||
Description: | mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628] |
Percent Identity: | 73.45 % |
Parental protein coverage: | 81.16 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | ASLLQAAPGAPRPSNSTLVDELESSFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFFL |
A.LLQ.APG..RP.NS.L...L.S.F.ACFASLVS..YVNGT.QEEI.TGVDQCIQKFLDIARQTECFFL | |
Retrocopy | ALLLQEAPGSLRPYNSSLMEKLKSYFQACFASLVSRNYVNGTNQEEIQTGVDQCIQKFLDIARQTECFFL |
Parental | QK-RLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRH |
QK.RL.LS.QKP...IKED..ELRNEL..KD.LVQ..LT.LRH | |
Retrocopy | QK<RL*LSLQKPDNAIKEDFLELRNEL*WKDMLVQ-NLT*LRH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 8 .40 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .90 RPM |
SRP007412_cerebellum | 0 .00 RPM | 7 .81 RPM |
SRP007412_heart | 0 .00 RPM | 5 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .86 RPM |
SRP007412_liver | 0 .00 RPM | 3 .05 RPM |
SRP007412_testis | 0 .00 RPM | 9 .99 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2188 |
Pan troglodytes | retro_ptro_1666 |
Gorilla gorilla | retro_ggor_1733 |
Pongo abelii | retro_pabe_2068 |
Callithrix jacchus | retro_cjac_2746 |