RetrogeneDB ID: | retro_itri_1064 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393366.1:1248958..1249486(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSSTOG00000000930 | ||
Aliases: | None | ||
Description: | mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628] |
Percent Identity: | 65.36 % |
Parental protein coverage: | 98.88 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | APLGGMFSGQPPGPPHPPPGLPGQASLLQAAPGAPRTSSSTLVDELESSFEACFASLVSQDYVNGTDQEE |
A.LG.MFS..PP.PP.P.P..PGQA.LL.A.PG..RTS.STLVDELESSFEACFAS..SQ.YVN..DQEE | |
Retrocopy | ATLGTMFS**PPAPPPPQPSFPGQALLLRAVPGTLRTSNSTLVDELESSFEACFASFMSQNYVNSIDQEE |
Parental | IRTGVDQCIQKFLDIARQTECFFLQKRLQL-SVQKPEQVI-KEDVSELRNELQRKDALVQKHLTKLRHWQ |
I.T.VDQC.QKFLD.A...............SVQ.PEQVI.K.DVSELRNE...KDAL.QKH.T.L.H.Q | |
Retrocopy | IQTSVDQCFQKFLDTATEXXXPYXXXXISI>SVQRPEQVI>KKDVSELRNEFYWKDALMQKHRTELKHGQ |
Parental | QVLEDINVQHKKPAEVPQG-SLAYLEQASANIPAPMKQT |
.VLEDI.VQHK.P...P.G.SL.YLEQASAN.P.P.KQT | |
Retrocopy | *VLEDIEVQHKSPRS-PSG>SLTYLEQASANVPVPLKQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |