RetrogeneDB ID: | retro_cjac_2746 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 6:101428741..101429216(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSCJAG00000012711 | ||
Aliases: | None | ||
Description: | mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628] |
Percent Identity: | 72.05 % |
Parental protein coverage: | 89.33 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | PPPGLPGQASLLQAAPGAPRPSNSTLVDELESSFEACFASLVSQDYVSGTDQEEIRTGVDQCIQKFLDIA |
PP....G...LLQ.APG..RP.NSTL...L.S.F.ACF.SLVSQ.YV.GT.QEEI.TGVDQCI.KFLDIA | |
Retrocopy | PPTTCTGASKLLQEAPGSLRPYNSTLMEKLKSYFQACFVSLVSQNYVNGTNQEEIQTGVDQCIWKFLDIA |
Parental | RQTECFFLQ-KRLQLSVQ-KPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDINVQHKKPADI |
RQT.CF.LQ.KRLQLSVQ..PE..IKED..ELRNEL..KD.LVQK.LTKLRH.QQVLE.INV.HKKPADI | |
Retrocopy | RQTGCFLLQ<KRLQLSVQ<EPENLIKEDFLELRNEL**KDMLVQKNLTKLRHSQQVLEGINVKHKKPADI |
Parental | PQGSLAYLEQASANIPAPLKP |
PQ.S.AYLE.ASANI.A.L.P | |
Retrocopy | PQVSFAYLE*ASANILAQL*P |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 20 .86 RPM |
SRP051959_heart | 0 .04 RPM | 16 .61 RPM |
SRP051959_kidney | 0 .00 RPM | 26 .85 RPM |
SRP051959_liver | 0 .00 RPM | 24 .87 RPM |
SRP051959_lung | 0 .00 RPM | 33 .82 RPM |
SRP051959_lymph_node | 0 .00 RPM | 31 .46 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 19 .65 RPM |
SRP051959_spleen | 0 .00 RPM | 31 .18 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2188 |
Pan troglodytes | retro_ptro_1666 |
Gorilla gorilla | retro_ggor_1733 |
Pongo abelii | retro_pabe_2068 |
Macaca mulatta | retro_mmul_916 |