RetrogeneDB ID: | retro_ocun_444 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:21557459..21557993(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000027390 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MED28 | ||
Ensembl ID: | ENSOCUG00000001576 | ||
Aliases: | None | ||
Description: | mediator complex subunit 28 [Source:HGNC Symbol;Acc:24628] |
Percent Identity: | 94.94 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATPLGGMFSGQPPGPPPPGSGLPGQASLLQAAPGAPRSSNSTLVDELESSFEACFASLVSQDYVNGTDQ |
MATPLGGMFSG.PPGP.PPGSGLPGQASLLQAAPG.PRSSNSTLVDELESSFEACF.SLVSQDYVNGTDQ | |
Retrocopy | MATPLGGMFSGLPPGPLPPGSGLPGQASLLQAAPGTPRSSNSTLVDELESSFEACFTSLVSQDYVNGTDQ |
Parental | EEIRTGVDQCIQKFLDIARQTECFFLQKRLQLSVQKPDQVIKEDVSELRNELQRKDALVQKHLTKLRHWQ |
EEIRTGVDQCIQK.LDIARQTECFFLQKRLQLSVQKP..VIKEDVSELRNELQRKDALVQKHLTKLRHWQ | |
Retrocopy | EEIRTGVDQCIQKLLDIARQTECFFLQKRLQLSVQKPEPVIKEDVSELRNELQRKDALVQKHLTKLRHWQ |
Parental | QVLEDINVQHKKPAEIPQGSLAYLEQASANIPAPLKQT |
QVLEDIN.QHKKPAEIPQ.SLAYLEQASANIPAPLKQT | |
Retrocopy | QVLEDINLQHKKPAEIPQDSLAYLEQASANIPAPLKQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .12 RPM |
SRP017611_kidney | 0 .00 RPM | 11 .25 RPM |
SRP017611_liver | 0 .00 RPM | 5 .63 RPM |