Parental gene:

MED28, ENSCPOG00000012616

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_73:2062668..2067687(+)


>ENSCPOG00000012616
ATGGCGGCTCCGCTGGGCGGTATGTTCTCTGCACAGCTGCCGGGGCCCTCGGGTGCCCCGCCAGGACTTTCGAGTCAGCC
CTCGCTTCTTCAAGCAGCGCCTGGGGCTCCTAGAAGTTCTAACAGTACCTTGGTCGACGAGTTGGAGTCATCATTTGAGG
CTTGCTTCGCTTCTCTTGTGAGTCAGGATTATGTCAACGGCACGGATCAGGAAGAAATTCGAACTGGTGTTGATCAGTGT
ATCCAGAAGTTTCTAGATATCGCAAGACAGACAGAATGTTTTTTCCTGCAAAAAAGATTGCAGTTATCTCTGCAGAAACC
AGAACAGGTTATCAAAGAGGACGTCTCGGAACTGAGGAATGAACTGCAGCGGAAAGACGCGCTGGTCCAGAAGCATTTGA
CAAAGCTGAGGCACTGGCAGCAGGTGCTGGAGGACATCAACGTGCAGCACAAAAAGCCCGCGGAAATGCCTCAGGGCTCC
CTGGCCTACCTGGAGCAGGCCTCAGCTAACATCCCTGCGCCGCTCAAGCAGACGTGA

Library Parental gene expression (RPM)
SRP017611_liver 8 .05 RPM
SRP017611_kidney 11 .41 RPM
SRP017611_brain 16 .22 RPM
SRP040447_lung 21 .49 RPM
SRP040447_skeletal_muscle 12 .32 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001760 ortholog_one2one 1 retrogene
retro_amel_1649,
Bos taurus ENSBTAG00000019441 ortholog_one2one 1 retrogene
retro_btau_973,
Callithrix jacchus ENSCJAG00000012711 ortholog_one2one 8 retrogenes
retro_cjac_1545, retro_cjac_1708, retro_cjac_2117, retro_cjac_2603, retro_cjac_2746, retro_cjac_3016, retro_cjac_4156, retro_cjac_848,
Dasypus novemcinctus ENSDNOG00000008526 ortholog_one2one 2 retrogenes
retro_dnov_2276, retro_dnov_2595,
Dipodomys ordii ENSDORG00000008042 ortholog_one2one 1 retrogene
retro_dord_116,
Homo sapiens ENSG00000118579 ortholog_one2one 5 retrogenes
retro_hsap_2188, retro_hsap_2465, retro_hsap_2860, retro_hsap_589, retro_hsap_919,
Gorilla gorilla ENSGGOG00000001114 ortholog_one2one 5 retrogenes
retro_ggor_1534, retro_ggor_1733, retro_ggor_1978, retro_ggor_409, retro_ggor_519,
Loxodonta africana ENSLAFG00000016936 ortholog_one2one 1 retrogene
retro_lafr_693,
Microcebus murinus ENSMICG00000006792 ortholog_one2one 2 retrogenes
retro_mmur_1172, retro_mmur_545,
Myotis lucifugus ENSMLUG00000001351 ortholog_one2many 1 retrogene
retro_mluc_1997,
Macaca mulatta ENSMMUG00000005734 ortholog_one2one 5 retrogenes
retro_mmul_1468, retro_mmul_2453, retro_mmul_507, retro_mmul_639, retro_mmul_916,
Monodelphis domestica ENSMODG00000000813 ortholog_one2one 1 retrogene
retro_mdom_1175,
Nomascus leucogenys ENSNLEG00000016620 ortholog_one2one 3 retrogenes
retro_nleu_2816, retro_nleu_284, retro_nleu_317,
Oryctolagus cuniculus ENSOCUG00000001576 ortholog_one2one 4 retrogenes
retro_ocun_1473, retro_ocun_1474, retro_ocun_337, retro_ocun_444,
Otolemur garnettii ENSOGAG00000033835 ortholog_one2one 4 retrogenes
retro_ogar_2031, retro_ogar_3387, retro_ogar_493, retro_ogar_998,
Ochotona princeps ENSOPRG00000003932 ortholog_one2one 2 retrogenes
retro_opri_134, retro_opri_382,
Pongo abelii ENSPPYG00000014627 ortholog_one2one 4 retrogenes
retro_pabe_1811, retro_pabe_2068, retro_pabe_2363, retro_pabe_601,
Pan troglodytes ENSPTRG00000015939 ortholog_one2one 3 retrogenes
retro_ptro_1424, retro_ptro_1666, retro_ptro_431,
Pteropus vampyrus ENSPVAG00000015716 ortholog_one2one 1 retrogene
retro_pvam_641,
Ictidomys tridecemlineatus ENSSTOG00000000930 ortholog_one2one 10 retrogenes
retro_itri_1064, retro_itri_1201, retro_itri_1437, retro_itri_1622, retro_itri_1660, retro_itri_1671, retro_itri_176, retro_itri_236, retro_itri_462, retro_itri_770,
Tursiops truncatus ENSTTRG00000006177 ortholog_one2one 1 retrogene
retro_ttru_484,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_207 52.46 65.73
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cpor_1165 57.26 69.10
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000012616 retrocopies