RetrogeneDB ID:

retro_mmur_1336

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_4573:100809..101526(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ATF1
Ensembl ID:ENSMICG00000003301
Aliases:None
Description:activating transcription factor 1 [Source:HGNC Symbol;Acc:783]


Retrocopy-Parental alignment summary:






>retro_mmur_1336
GTATCATCTTTATCAGAAAGTGAGGAGTCTCAGGACTCATCTGACAGCATAGGCTCCTCACAGAAAGCCCACGGGATCCT
AGCACGGCGCCCATCGTACAGGAAAATTTTTAAAGATCTATCTTCTGAAGATACACGAGGCAGAAAAGGAGATGGAGAAA
ACCCTGGAGTTTCTGCTGTCACTTCTATGTCCGTTCCTACTCCCATCTATCAGACTAGCAGTGGACAGTACATTGCCATT
GCCCCAAATGGAGCCTTACAGTTGGCCAGTCCAGGGACAGATGGAGTACAGGGACTTCAGACATTAACCATGACGAATTC
AGGCAATACTCAGCAAGGTACAACTATTCTCCAGTATGCGCAGACCTCTGATGGACAGCAAATACTTGTGCACAGCAATC
AAGTGGTAGTACAGACGGCATCGGGAGATATGCAGACATATCAGATTCGTACCACACCTTCAGCTACTTCTCTGCCACAA
ACTGTGGTGATGACATCTCCTGTTACTCTTACATCTCAGACAACTAAGACAGATGACCCCCAATTGAAAAGAGAAATAAG
GTTAATGAAAAACAGAGAGGCAGCTCGAGAATGTCGCAGAAAGAAGAAAGAATATGTTAAATGCCTGGAAAATCAAGTTG
CAGTCCTGGAAAATCAAAATAAGACTCTAATAGAAGAGTTAAAAACTTTGAAGGATCTTTATTCCCATAAAAGTGTT

ORF - retro_mmur_1336 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 99.16 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVSSLSESEESQDSSDSIGSSQKAHGILARRPSYRKIFKDLSSEDTRGRKGDGENPGVSAVTSMSVPTPIY
VSSLSESEESQDSSDSIGSSQKAHGILARRPSYRKIFKDLSSEDTRGRKGDGENPGVSAVTSMSVPTPIY
RetrocopyVSSLSESEESQDSSDSIGSSQKAHGILARRPSYRKIFKDLSSEDTRGRKGDGENPGVSAVTSMSVPTPIY
ParentalQTSSGQYIAIAPNGALQLASPGTDGVQGLQTLTMTNSGNTQQGTTILQYAQTSDGQQILVPSNQVVVQTA
QTSSGQYIAIAPNGALQLASPGTDGVQGLQTLTMTNSGNTQQGTTILQYAQTSDGQQILV.SNQVVVQTA
RetrocopyQTSSGQYIAIAPNGALQLASPGTDGVQGLQTLTMTNSGNTQQGTTILQYAQTSDGQQILVHSNQVVVQTA
ParentalSGDMQTYQIRTTPSATSLPQTVVMTSPVTLTSQTTKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLE
SGDMQTYQIRTTPSATSLPQTVVMTSPVTLTSQTTKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLE
RetrocopySGDMQTYQIRTTPSATSLPQTVVMTSPVTLTSQTTKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLE
ParentalNRVAVLENQNKTLIEELKTLKDLYSHKSV
N.VAVLENQNKTLIEELKTLKDLYSHKSV
RetrocopyNQVAVLENQNKTLIEELKTLKDLYSHKSV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1336 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1336 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000047335 retrocopies
Felis catus ENSFCAG000000138921 retrocopy
Microcebus murinus ENSMICG00000003301 1 retrocopy
retro_mmur_1336 ,
Sarcophilus harrisii ENSSHAG000000046372 retrocopies



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