RetrogeneDB ID: | retro_chof_27 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_122351:3105..3525(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000006035 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATF1 | ||
Ensembl ID: | ENSCHOG00000004733 | ||
Aliases: | None | ||
Description: | activating transcription factor 1 [Source:HGNC Symbol;Acc:783] |
Percent Identity: | 94.96 % |
Parental protein coverage: | 51.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LTMTNSGSSQQGTTTILQYAQTSDGQQILVPSNQVVVQTASGDMQTYQIRTTPTASSLPQTVVMTSPVNL |
L.MTNSG..QQGTTTILQYAQ..DGQ.ILVPSNQVVVQTASGDMQTYQIRTTPTASSLPQTVVMTSPVNL | |
Retrocopy | LIMTNSGIYQQGTTTILQYAQAGDGQKILVPSNQVVVQTASGDMQTYQIRTTPTASSLPQTVVMTSPVNL |
Parental | TSQTTKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSHKSV |
TSQTTKTD.PQLKREIRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSHKSV | |
Retrocopy | TSQTTKTDEPQLKREIRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSHKSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004733 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008000 | 2 retrocopies | |
Felis catus | ENSFCAG00000013892 | 1 retrocopy | |
Homo sapiens | ENSG00000123268 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003301 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023027 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017023 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010038 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004637 | 2 retrocopies |