RetrogeneDB ID: | retro_chof_1987 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_444561:2..435(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATF1 | ||
Ensembl ID: | ENSCHOG00000004733 | ||
Aliases: | None | ||
Description: | activating transcription factor 1 [Source:HGNC Symbol;Acc:783] |
Percent Identity: | 76.19 % |
Parental protein coverage: | 53.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | STGQYIAIAPNGALQLASPGTDGVQGLQTLTMTNSGSSQQGTTTILQYAQTSDGQQILVPSNQVVVQTAS |
ST....AIAPNG.L.LASPGTDGVQGLQTLTMTNSGS.QQ..TT.LQYAQTS..QQILVPSNQ.VV.... | |
Retrocopy | STHLRVAIAPNGDL*LASPGTDGVQGLQTLTMTNSGSTQQ-STTVLQYAQTSGEQQILVPSNQ-VVEKTA |
Parental | G-DMQTYQIRTTPTASSLPQTVVMTSPVNLTSQTTKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLE |
........I.TTPTA..LPQTV.MT.PVNLTSQTTK.DDPQLKREIRLMKNREAA.E..RKKKEY.KCLE | |
Retrocopy | S>EIRRHHIHTTPTATLLPQTVKMTAPVNLTSQTTKIDDPQLKREIRLMKNREAAGEYYRKKKEYMKCLE |
Parental | NRVAVLE |
NRVAVLE | |
Retrocopy | NRVAVLE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004733 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008000 | 2 retrocopies | |
Felis catus | ENSFCAG00000013892 | 1 retrocopy | |
Homo sapiens | ENSG00000123268 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003301 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023027 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017023 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010038 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004637 | 2 retrocopies |