RetrogeneDB ID: | retro_chof_462 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_112025:43..661(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATF1 | ||
Ensembl ID: | ENSCHOG00000004733 | ||
Aliases: | None | ||
Description: | activating transcription factor 1 [Source:HGNC Symbol;Acc:783] |
Percent Identity: | 95.63 % |
Parental protein coverage: | 76.01 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KILKDLSSEDIRGRKGDGENPGVSTVTSMSVPTPIYQTSTGQYIAIAPNGALQLASPGTDGVQGLQTLTM |
KILKD.SSEDIRGRKGDGENP.VSTVTSMSVPTPIYQTSTGQYIAIAPNGALQLASPGTDGVQGLQTLTM | |
Retrocopy | KILKDVSSEDIRGRKGDGENPAVSTVTSMSVPTPIYQTSTGQYIAIAPNGALQLASPGTDGVQGLQTLTM |
Parental | TNSGSSQQGTTTILQYAQTSDGQQILVPSNQVVVQTASGDMQTYQIRTTPTASSLPQTVVMTSPVNLTSQ |
TNSGSSQQGTTT.LQYAQTSDG.QILVPSNQVVVQTASGDMQTYQI.TTPTASSLPQTVVM.SPVNLTSQ | |
Retrocopy | TNSGSSQQGTTTVLQYAQTSDGPQILVPSNQVVVQTASGDMQTYQIHTTPTASSLPQTVVMISPVNLTSQ |
Parental | TTKTDDPQLKREIRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSHKSV |
TTK.DDPQLKREIRLMKNREAA..CRRKKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSHKSV | |
Retrocopy | TTKADDPQLKREIRLMKNREAAQKCRRKKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSHKSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004733 | 5 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008000 | 2 retrocopies | |
Felis catus | ENSFCAG00000013892 | 1 retrocopy | |
Homo sapiens | ENSG00000123268 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003301 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023027 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017023 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010038 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000004637 | 2 retrocopies |