Parental gene:

Ubxn2a, ENSMUSG00000020634

Aliases:Ubxn2a, 6330407P03Rik, Ubxd4
Description:UBX domain protein 2A [Source:MGI Symbol;Acc:MGI:2442310]
Organism:Mouse (Mus musculus)
Coordinates:12:4879031..4907705(-)


>ENSMUSG00000020634
ATGAAAGAAGTAGATAATCTTGACAGTATAAAAGAAGAATGGGCTTGTGAAACAGGACCTCCTGACAGTCAACCCCTCAA
TGATAATCAACAAAAGGACTGTGAATATTTTGTTGACAGCCTTTTTGAGGAAGCAGGGAAGGCTGGTGCCAAATGCTTGT
CCCCCACTGAACAGAAGAAACAGGTAGATGTAAATATAAAATTGTGGAAAAACGGATTCACTGTCAATGATGATTTTAGA
AGTTACTCTGATGGTGCAAGTCAGCAGTTTCTGAACTCCATCAAAAAGGGGGAATTACCTTCAGAATTATGGGGAATTTT
TGATAAAGAGGAGGTGGATGTTAAAGTTGAAGATAAGAAAAATGAAGTATGTATGTCTACAAAGCCTGTGTTCCAGCCCT
TCTCAGGACAGGGCCACAGACTAGGAAGTGCTACACCAAGAATCGTTTCTAAAGCAAAGAGTGTTGAAGTTGACAATAAA
AGTACTTTGTCTGCTGTTTCACTGAACAACTTGGAGCCCATTACCAGGATCCAGATCTGGTTAGCCAATGGGGAAAGAAC
TGTCCAAAGATTTAATGTTTCTCATAGGGTGAGCCACATCAAAGACTTCATTGAAAAATACCAAGGATCTCAGAGAAGCC
CTCCCTTTGCCCTGGCAACAGCTCTTCCTTTCCTCAGGTTTCTGGATGAAACGCTCACATTGGAAGAAGCAGATTTGAAG
AATGCTGTAATCATTCAGAGACTCCAAAAAACTGCCGAGCCTTTTAGAAAACTTTGA

Library Parental gene expression (RPM)
SRP007412_brain 32 .71 RPM
SRP007412_cerebellum 42 .25 RPM
SRP007412_heart 46 .66 RPM
SRP007412_kidney 60 .98 RPM
SRP007412_liver 20 .37 RPM
SRP007412_testis 5 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000001640 ortholog_one2one 5 retrogenes
retro_chof_1096, retro_chof_1171, retro_chof_2641, retro_chof_961, retro_chof_964,
Callithrix jacchus ENSCJAG00000007665 ortholog_one2one 1 retrogene
retro_cjac_2085,
Equus caballus ENSECAG00000020144 ortholog_one2one 1 retrogene
retro_ecab_569,
Echinops telfairi ENSETEG00000002623 ortholog_one2one 1 retrogene
retro_etel_1116,
Homo sapiens ENSG00000173960 ortholog_one2one 1 retrogene
retro_hsap_2025,
Gorilla gorilla ENSGGOG00000002445 ortholog_one2one 1 retrogene
retro_ggor_1463,
Myotis lucifugus ENSMLUG00000015640 ortholog_one2one 1 retrogene
retro_mluc_1195,
Macaca mulatta ENSMMUG00000006487 ortholog_one2one 1 retrogene
retro_mmul_2068,
Mus musculus ENSMUSG00000027455 within_species_paralog 1 retrogene
retro_mmus_2565,
Nomascus leucogenys ENSNLEG00000000751 ortholog_one2one 1 retrogene
retro_nleu_2612,
Oryctolagus cuniculus ENSOCUG00000008783 ortholog_one2many 1 retrogene
retro_ocun_207,
Otolemur garnettii ENSOGAG00000000025 ortholog_one2one 1 retrogene
retro_ogar_1909,
Procavia capensis ENSPCAG00000011502 ortholog_one2one 4 retrogenes
retro_pcap_169, retro_pcap_255, retro_pcap_271, retro_pcap_323,
Pan troglodytes ENSPTRG00000011705 ortholog_one2one 1 retrogene
retro_ptro_1347,
Rattus norvegicus ENSRNOG00000004950 ortholog_one2one 2 retrogenes
retro_rnor_1746, retro_rnor_2966,
Sorex araneus ENSSARG00000010108 ortholog_one2one 1 retrogene
retro_sara_272,
Sus scrofa ENSSSCG00000026283 ortholog_one2one 1 retrogene
retro_sscr_537,
Tupaia belangeri ENSTBEG00000012158 ortholog_one2one 1 retrogene
retro_tbel_3887,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_1007 94.19 100.00
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Download FASTA sequences of all ENSMUSG00000020634 retrocopies