RetrogeneDB ID: retro_mputfur_110

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896949.1:8660232..8660880(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000019961
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: EIF4E2
• Ensembl ID: ENSMPUG00000005206
• Aliases: None
• Description: eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293]

Sequence

>retro_mputfur_110
GAAGAAAACAGCACACAGAAAGATGGTGTGAAGGAAAAAATGGAACGAGACAAGAATCAGGGAAGCAGTAAGAGGAAGGC
TGTTGTGCCTGGACCAGCAGAGCATCCCCTGCAGTACAACTATACTTTCTGGTACTCCAGAAGGACCCCTGGCCGTCCCA
CCAGCTCACAGAGCTATGAACAGAATATCAAACAGATTGGCACCTTTGCCTCCGTGGAGCAGTTCTGGAGGTTTTATAGC
CACATGGTACGTCCCGGGGACCTGACAGGCCACAGTGACTTCCATCTCTTCAAAGAAGGAATTAAACCCATGTGGGAGGA
TGATGCAAATAAAAATGGTGGCAAGTGGATTATTCAGCTGCGGAAGGGCTTGGCGTCCCGTTGCTGGGAGAATCTTATCC
TGGCCATGTTGGGGGAACAGTTCATGGTTGGGGAGGAGATCTGTGGGGCTGTGGTCTCTGTCCGGTTTCAGGAGGACATT
ATTTCAATATGGAATAAGACTGCCAGTGACCAAGCAACCACAGCCCGAATCCGGGATATGCTTCGGCAAGTGCTTAATCT
ACCTCCCAACACCATTATGGAGTACAAAACCCACACCGACGGCATCAAAATGCCAGCAGGCTGGGCCCCCAAAGGCTCCT
TTTTCAAA

Alignment

ORF - retro_mputfur_110 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.52 %
• Parental protein coverage: 88.16 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EENSTQKDGEKEKMERDKNQGSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFA
          EENSTQKDG.KEKMERDKNQGSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFA
Retrocopy EENSTQKDGVKEKMERDKNQGSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFA

Parental  SVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQ
          SVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWII.LRKGLASRCWENLILAMLGEQ
Retrocopy SVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIQLRKGLASRCWENLILAMLGEQ

Parental  FMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPNTIMEYKTHTDSIKMPGRLGP
          FMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRD.LR.VLNLPPNTIMEYKTHTD.IKMP....P
Retrocopy FMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDMLRQVLNLPPNTIMEYKTHTDGIKMPAGWAP

Parental  QRLLFQ
          ....F.
Retrocopy KGSFFK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_110 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_110 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 14 parental genes, and 22 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000016456	1 retrocopy	retro_amel_1304,
Bos taurus	ENSBTAG00000010598	2 retrocopies	retro_btau_1232, retro_btau_1498,
Canis familiaris	ENSCAFG00000011328	1 retrocopy	retro_cfam_183,
Choloepus hoffmanni	ENSCHOG00000013109	3 retrocopies	retro_chof_1963, retro_chof_369, retro_chof_567,
Erinaceus europaeus	ENSEEUG00000015153	2 retrocopies	retro_eeur_57, retro_eeur_668,
Echinops telfairi	ENSETEG00000007930	1 retrocopy	retro_etel_1385,
Microcebus murinus	ENSMICG00000015082	2 retrocopies	retro_mmur_806, retro_mmur_975,
Myotis lucifugus	ENSMLUG00000011269	1 retrocopy	retro_mluc_60,
Mustela putorius furo	ENSMPUG00000002041	1 retrocopy	retro_mputfur_37,
Mustela putorius furo	ENSMPUG00000005206	2 retrocopies	retro_mputfur_110 , retro_mputfur_1554,
Nomascus leucogenys	ENSNLEG00000014333	1 retrocopy	retro_nleu_1189,
Pan troglodytes	ENSPTRG00000013043	1 retrocopy	retro_ptro_1816,
Sarcophilus harrisii	ENSSHAG00000013108	1 retrocopy	retro_shar_101,
Ictidomys tridecemlineatus	ENSSTOG00000003508	3 retrocopies	retro_itri_1270, retro_itri_1370, retro_itri_573,