RetrogeneDB ID: | retro_itri_573 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393302.1:12243850..12244491(+) | ||
Located in intron of: | ENSSTOG00000001855 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E2 | ||
Ensembl ID: | ENSSTOG00000003508 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293] |
Percent Identity: | 60.18 % |
Parental protein coverage: | 91.95 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | KRKNFSFLKDDDSGDHDQNEENSTQKDGEKEKTERDKSQSSSK-RKAVVPGPAEHPLQYNYTFWYS-RRT |
....FS.L.DD.SGD.DQN.ENSTQK.G......R....SSS..R....PGPAEHPLQY......S.R.T | |
Retrocopy | RMNKFSSLNDDVSGDRDQNVENSTQKNGRNKNGMRQ--ESSSR<RWVTDPGPAEHPLQYKHFLVAS<RKT |
Parental | PGRPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTG-HSDFHLFKEGIKPMWEDDANKNGGKWII |
P..P.SS.S.EQ..KQI...ASVEQ.WR.YSHMV.PGDLTG.HSDFHLFKEG.K.MWE..ANKN..K.II | |
Retrocopy | PSYPISSRSCEQIVKQICIYASVEQLWRLYSHMVCPGDLTG<HSDFHLFKEGMKHMWEVNANKNVDKQII |
Parental | R-LRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNL |
..L.KGL.S..WENL.LA.LGE.F.VGE...GAV.SV.F.....SIWN..ASDQA.TA.I.D.L..VL.. | |
Retrocopy | F<LQKGLVSCIWENLLLALLGE*FLVGEKVYGAVISVHF*GGVVSIWNNNASDQAATA*INDVLQYVLSP |
Parental | PPNTIMEYKTH |
PPNTI..YK.H | |
Retrocopy | PPNTIVYYKAH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016456 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000011328 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013786 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000015082 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000011269 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005206 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009155 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013108 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002230 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003508 | 3 retrocopies |
retro_itri_1270, retro_itri_1370, retro_itri_573 ,
|