Parental gene:

ENSCAFG00000011328

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:25:44192034..44201429(+)


>ENSCAFG00000011328
AGATTGAAAGATGATGACAGTGGGGACCATGATCAGAATGAAGAAAACAGCACACAGAAAGATGGTGAGAAGGAAAAAAC
GGAACGAGACAAAAGTCAGGGCAGCAGTAAGAGGAAGGCTGTTGTCCCTGGGCCAGCAGAGCATCCCCTGCAGTACAACT
ATACTTTCTGGTACTCCAGAAGAACCCCTGGCCGTCCCACCAGCTCACAGAGCTATGAACAGAATATCAAACAGATCGGC
ACCTTTGCCTCTGTGGAGCAGTTCTGGAGGTTTTATAGCCACATGGTACGTCCTGGGGACCTGACAGGCCACAGTGACTT
CCATCTCTTCAAAGAAGGAATTAAGCCCATGTGGGAGGATGATGCAAATAAAAATGGTGGCAAGTGGATTATTCGACTGC
GGAAGGGCTTGGCATCCCGTTGCTGGGAGAATCTCATCCTGGCCATGTTGGGGGAACAGTTCATGGTTGGGGAGGAGATC
TGTGGGGCTGTGGTCTCTGTCCGGTTTCAGGAGGACATTATTTCAATATGGAATAAGACTGCCAGTGACCAAGCAACCAC
AGCCCGCATCCGGGATACCCTTCGGCGAGTGCTTAACCTACCTCCCAACACCATTATGGAGTACAAAACCCACACCGACA
GCATCAAGTATGTGTTGGGGGTGCTCGGGGGGCATGTCCCT

Library Parental gene expression (RPM)
SRP012049_cerebellum 10 .96 RPM
SRP017611_brain 3 .18 RPM
SRP017611_kidney 7 .53 RPM
SRP017611_liver 1 .89 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016456 possible_ortholog 1 retrogene
retro_amel_1304,
Bos taurus ENSBTAG00000010598 ortholog_one2one 2 retrogenes
retro_btau_1232, retro_btau_1498,
Canis familiaris ENSCAFG00000010307 within_species_paralog 1 retrogene
retro_cfam_1276,
Choloepus hoffmanni ENSCHOG00000013109 possible_ortholog 3 retrogenes
retro_chof_1963, retro_chof_369, retro_chof_567,
Callithrix jacchus ENSCJAG00000013786 possible_ortholog 2 retrogenes
retro_cjac_1061, retro_cjac_2717,
Dasypus novemcinctus ENSDNOG00000016877 possible_ortholog 1 retrogene
retro_dnov_1374,
Equus caballus ENSECAG00000020187 possible_ortholog 2 retrogenes
retro_ecab_300, retro_ecab_847,
Erinaceus europaeus ENSEEUG00000015153 possible_ortholog 2 retrogenes
retro_eeur_57, retro_eeur_668,
Echinops telfairi ENSETEG00000007930 possible_ortholog 1 retrogene
retro_etel_1385,
Homo sapiens ENSG00000135930 possible_ortholog 1 retrogene
retro_hsap_2689,
Macropus eugenii ENSMEUG00000015519 possible_ortholog 2 retrogenes
retro_meug_445, retro_meug_644,
Microcebus murinus ENSMICG00000015082 possible_ortholog 2 retrogenes
retro_mmur_806, retro_mmur_975,
Myotis lucifugus ENSMLUG00000011269 possible_ortholog 1 retrogene
retro_mluc_60,
Monodelphis domestica ENSMODG00000002680 possible_ortholog 1 retrogene
retro_mdom_1717,
Mustela putorius furo ENSMPUG00000005206 possible_ortholog 2 retrogenes
retro_mputfur_110, retro_mputfur_1554,
Nomascus leucogenys ENSNLEG00000014333 possible_ortholog 1 retrogene
retro_nleu_1189,
Otolemur garnettii ENSOGAG00000009155 possible_ortholog 1 retrogene
retro_ogar_104,
Pan troglodytes ENSPTRG00000013043 possible_ortholog 1 retrogene
retro_ptro_1816,
Pteropus vampyrus ENSPVAG00000007494 possible_ortholog 4 retrogenes
retro_pvam_1147, retro_pvam_340, retro_pvam_541, retro_pvam_720,
Sarcophilus harrisii ENSSHAG00000013108 possible_ortholog 1 retrogene
retro_shar_101,
Ictidomys tridecemlineatus ENSSTOG00000003508 possible_ortholog 3 retrogenes
retro_itri_1270, retro_itri_1370, retro_itri_573,
Tupaia belangeri ENSTBEG00000004455 possible_ortholog 11 retrogenes
retro_tbel_1299, retro_tbel_2197, retro_tbel_2623, retro_tbel_2680, retro_tbel_3932, retro_tbel_4471, retro_tbel_4622, retro_tbel_536, retro_tbel_616, retro_tbel_650, retro_tbel_714,
Tursiops truncatus ENSTTRG00000010927 possible_ortholog 2 retrogenes
retro_ttru_1799, retro_ttru_1920,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_183 98.14 94.71
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Download FASTA sequences of all ENSCAFG00000011328 retrocopies