RetrogeneDB ID: | retro_mputfur_211 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896898.1:1317113..1317722(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ST13 | ||
Ensembl ID: | ENSMPUG00000016432 | ||
Aliases: | None | ||
Description: | suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343] |
Percent Identity: | 85.85 % |
Parental protein coverage: | 58.17 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | LNDGELQKAIDLFTDAIKLNPRLAILYAKRASVFIKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRL |
.NDGELQK.IDL.TDAIKLN..LAILYAKRASVFIKLQ..NAAI.DCDRAIEINPDS..P.K.R.KAHRL | |
Retrocopy | INDGELQKVIDLSTDAIKLNSFLAILYAKRASVFIKLQRLNAAIGDCDRAIEINPDSS*PCK*REKAHRL |
Parental | LGHWEEAAHDLALACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKARE-EHER |
LGHWEEAAHDLALACKLDYDEDASAML.EV..RAQKIAEH.RKYE.K..E.EIKERIERVKK.RE.EHER | |
Retrocopy | LGHWEEAAHDLALACKLDYDEDASAML*EV*LRAQKIAEHQRKYE*KHKEQEIKERIERVKKPRE<EHER |
Parental | AQREEEARRQSGAQYGSFPGGFPGG-MPGNFPGGMPGMAGGMPGMAGMPGLNEILSDPEVLAAMQ |
AQ.EEEAR.QSGAQYGSFPGGFPGG.MPGNFPGGMPGMAGGMPGMAGMPGL.E.LSDP.VLAAMQ | |
Retrocopy | AQMEEEARGQSGAQYGSFPGGFPGG>MPGNFPGGMPGMAGGMPGMAGMPGLKEVLSDP*VLAAMQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005227 | 1 retrocopy | |
Ailuropoda melanoleuca | ENSAMEG00000013880 | 1 retrocopy | |
Bos taurus | ENSBTAG00000006202 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000001139 | 14 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012676 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000004644 | 11 retrocopies | |
Cavia porcellus | ENSCPOG00000002290 | 4 retrocopies | |
Felis catus | ENSFCAG00000011847 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000026747 | 16 retrocopies | |
Myotis lucifugus | ENSMLUG00000007764 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000019118 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000013042 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000016432 | 15 retrocopies | |
Otolemur garnettii | ENSOGAG00000016932 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000011858 | 14 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000000319 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000003165 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011510 | 5 retrocopies |