RetrogeneDB ID: | retro_shar_767 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL864731.1:61378..62066(-) | ||
Located in intron of: | ENSSHAG00000001677 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSHAG00000000319 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.78 % |
Parental protein coverage: | 66.95 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | NAAIQLLTEAIKLNPRLAILYAKRASIFIKLQKPNAAIRDC-DRAIEINPDSAQPYKWRGKAHRLLGHWE |
......L...........ILYA...S.FIKLQK.NA.I.DC.DR.I.INP.S..PYK..GKAHR..G.WE | |
Retrocopy | SSVVVILKLPLLFSQESPILYAESVS-FIKLQKLNATIGDC>DRNI*INPNSNKPYKL*GKAHRI-GYWE |
Parental | DSARDLAMACKLDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREVKERLERVKKAREEHERAQREEE |
.SA.D..MACKLDYD.....MLK.............R....K..E...KE.LERVKKA.EE.E.....EE | |
Retrocopy | ESAWDFSMACKLDYDDYTNVMLKK-SSQGPRTLQNIRGNGEKCVE*DIKEMLERVKKAPEEYEQVHKQEE |
Parental | ARRTSGAQFGSFPGFPGGMPGNFGGMPGMGGAMPGMAGMAGMPGLNEILSDPEVL-AAMQDPEVMVAFQD |
A..TSG.QF.SFP.FP.G.PG.FGG.PGM.GA...MA.M......N.IL.DPEVL..AMQ.PEV.V.FQ. | |
Retrocopy | AQKTSGVQFVSFPDFPIGKPGIFGGIPGMRGA---MARMTRILRPNDILGDPEVL<SAMQNPEVVVVFQN |
Parental | VAQ-NPANMSKYQSNPKVMNLISKLSAK |
VAQ.NP.N.SKYQS..KVMNLI..LS.K | |
Retrocopy | VAQ>NPGNISKYQSKFKVMNLIINLSSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |