Parental gene:

ENSCJAG00000004644

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:201529516..201563082(-)


>ENSCJAG00000004644
ATGGACCCCCGCAAAGTGAACGAGCTTCGGGCCTTTGTGAAGATGTGTAAGCAGGATCCAAGCGTTCTGCATACCGAGGA
AATGCGCTTCCTGAGGGAGTGGGTGGAGAGTATGGGGGGTAAAATACCACCTGCTACTCAGAAAGCTAAATCAGAAGAAA
ATACCAAGGAAGAAAAACCTGATAGTAAGAAGGTAGAGGAAGACTTAAAGGCAGACGAACCATCAAGTGAGGAAAGTGAT
TTAGAAATTGATAATGAAGGTGTGATTGAACCAGACACTGACACCCCTCAAGAAATGGGAGATGAAAATGCAGAGATAAC
AGAGGAGATGATGGATCAGGCAAATGATAAGAAAGTGGCTGCTATTGAAGCCCTAAATGATGGTGAATTGCAGAAAGCCA
TTGACTTATTCACAGATGCCATCAAGCTGAATCCTCGCTTGGCCATTTTATATGCCAAGAGGGCCAGTGTCTTCGTCAAA
TTACAGAAGCCAAATGCTGCCATCCGAGACTGTGACAGAGCCATTGAAATAAATCCTGATTCAGCTCAACCTTACAAGTG
GCGAGGGAAAGCACACAGACTTCTAGGCCACTGGGAAGCAGCAGCCCATGATCTTGCCCTTGCCTGTAAATTGGATTATG
ATGAAGATGCGAGTGCAATGCTGAAAGAAGTTCAACCTAGGGCACAGAAAATTGCAGAACATCGGAGAAAGTATGAGCGA
AAACGTGAAGAGCGAGAGATCAAAGAAAGAATAGAAAGAGTTAAGAAGGCTCGAGAAGAGCATGAGAGAGCCCAGAGGGA
GGAAGAAGCCAGACGACAGTCAGGAGCTCAGTATGGCTCTTTTCCAGGTGGCTTTCCTGGGGGAATGCCTGGTGGTTTTC
CTGGAGGAATGCCTGGAATGGGAGGGGGCATGCCTGGAATGGCCGGAATGCCTGGACTCAATGAAATTCTTAGTGATCCA
GAGGTTCTTGCAGCCATGCAGGATCCAGAAGTTATGGTGGCCTTCCAGGATGTGGCTCAGAACCCAGCAAATATGTCAAA
ATACCAGAGCAACCCAAAGGTTATGAATCTTATCAGCAAATTGTCAGCCAAATTTGGAGGTCAAGCATAA

Library Parental gene expression (RPM)
SRP051959_spleen 61 .91 RPM
SRP051959_skeletal_muscle 80 .10 RPM
SRP051959_lymph_node 61 .85 RPM
SRP051959_lung 59 .25 RPM
SRP051959_liver 118 .48 RPM
SRP051959_kidney 129 .52 RPM
SRP051959_heart 52 .32 RPM
SRP051959_colon 51 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005227 possible_ortholog 1 retrogene
retro_acar_2,
Ailuropoda melanoleuca ENSAMEG00000013880 possible_ortholog 1 retrogene
retro_amel_135,
Bos taurus ENSBTAG00000006202 possible_ortholog 4 retrogenes
retro_btau_254, retro_btau_427, retro_btau_621, retro_btau_658,
Canis familiaris ENSCAFG00000001139 possible_ortholog 14 retrogenes
retro_cfam_1029, retro_cfam_1101, retro_cfam_1122, retro_cfam_1239, retro_cfam_1467, retro_cfam_1830, retro_cfam_1950, retro_cfam_1958, retro_cfam_247, retro_cfam_262, retro_cfam_582, retro_cfam_808, retro_cfam_901, retro_cfam_969,
Choloepus hoffmanni ENSCHOG00000012676 ortholog_one2many 1 retrogene
retro_chof_2222,
Cavia porcellus ENSCPOG00000002290 ortholog_one2many 4 retrogenes
retro_cpor_1394, retro_cpor_1477, retro_cpor_166, retro_cpor_961,
Felis catus ENSFCAG00000011847 possible_ortholog 2 retrogenes
retro_fcat_920, retro_fcat_987,
Homo sapiens ENSG00000100380 ortholog_one2many 16 retrogenes
retro_hsap_1055, retro_hsap_1203, retro_hsap_178, retro_hsap_201, retro_hsap_2078, retro_hsap_2189, retro_hsap_2853, retro_hsap_3206, retro_hsap_3907, retro_hsap_4009, retro_hsap_4876, retro_hsap_500, retro_hsap_619, retro_hsap_756, retro_hsap_812, retro_hsap_986,
Gorilla gorilla ENSGGOG00000026747 ortholog_one2many 16 retrogenes
retro_ggor_1600, retro_ggor_1734, retro_ggor_1791, retro_ggor_1975, retro_ggor_2177, retro_ggor_2634, retro_ggor_2692, retro_ggor_277, retro_ggor_3045, retro_ggor_629, retro_ggor_666, retro_ggor_749, retro_ggor_788, retro_ggor_832, retro_ggor_833, retro_ggor_938,
Microcebus murinus ENSMICG00000008875 ortholog_one2many 2 retrogenes
retro_mmur_481, retro_mmur_954,
Myotis lucifugus ENSMLUG00000007764 ortholog_one2many 2 retrogenes
retro_mluc_1088, retro_mluc_2021,
Macaca mulatta ENSMMUG00000019118 ortholog_one2many 3 retrogenes
retro_mmul_1842, retro_mmul_402, retro_mmul_438,
Monodelphis domestica ENSMODG00000013042 ortholog_many2many 2 retrogenes
retro_mdom_1087, retro_mdom_31,
Mustela putorius furo ENSMPUG00000016432 possible_ortholog 15 retrogenes
retro_mputfur_1640, retro_mputfur_211, retro_mputfur_212, retro_mputfur_233, retro_mputfur_272, retro_mputfur_282, retro_mputfur_289, retro_mputfur_343, retro_mputfur_373, retro_mputfur_379, retro_mputfur_402, retro_mputfur_450, retro_mputfur_506, retro_mputfur_605, retro_mputfur_778,
Mus musculus ENSMUSG00000022403 ortholog_one2many 2 retrogenes
retro_mmus_2997, retro_mmus_651,
Nomascus leucogenys ENSNLEG00000015378 ortholog_one2many 17 retrogenes
retro_nleu_1142, retro_nleu_1155, retro_nleu_1606, retro_nleu_1852, retro_nleu_2075, retro_nleu_2088, retro_nleu_2376, retro_nleu_2404, retro_nleu_247, retro_nleu_2555, retro_nleu_2765, retro_nleu_3121, retro_nleu_3122, retro_nleu_319, retro_nleu_447, retro_nleu_552, retro_nleu_988,
Otolemur garnettii ENSOGAG00000016932 ortholog_many2many 1 retrogene
retro_ogar_224,
Pongo abelii ENSPPYG00000011858 ortholog_one2many 14 retrogenes
retro_pabe_1004, retro_pabe_2181, retro_pabe_2361, retro_pabe_2657, retro_pabe_2885, retro_pabe_3183, retro_pabe_3673, retro_pabe_3794, retro_pabe_437, retro_pabe_554, retro_pabe_727, retro_pabe_763, retro_pabe_798, retro_pabe_880,
Pelodiscus sinensis ENSPSIG00000004553 possible_ortholog 1 retrogene
retro_psin_42,
Pteropus vampyrus ENSPVAG00000011908 ortholog_one2many 2 retrogenes
retro_pvam_1104, retro_pvam_393,
Rattus norvegicus ENSRNOG00000019070 ortholog_one2many 8 retrogenes
retro_rnor_1360, retro_rnor_1725, retro_rnor_1798, retro_rnor_1976, retro_rnor_2204, retro_rnor_2372, retro_rnor_2481, retro_rnor_2543,
Sarcophilus harrisii ENSSHAG00000000319 ortholog_many2many 2 retrogenes
retro_shar_70, retro_shar_767,
Sus scrofa ENSSSCG00000000071 ortholog_one2many 1 retrogene
retro_sscr_428,
Ictidomys tridecemlineatus ENSSTOG00000003165 ortholog_many2many 1 retrogene
retro_itri_88,
Tursiops truncatus ENSTTRG00000011510 possible_ortholog 5 retrogenes
retro_ttru_1245, retro_ttru_1425, retro_ttru_1615, retro_ttru_385, retro_ttru_670,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_488 88.48 88.62
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2. retro_cjac_640 89.43 100.00
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3. retro_cjac_685 87.67 81.30
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4. retro_cjac_1843 80.00 78.05
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5. retro_cjac_1953 84.10 63.96
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6. retro_cjac_2177 93.36 73.44
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7. retro_cjac_2275 84.82 100.00
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8. retro_cjac_2789 92.55 76.42
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9. retro_cjac_3123 86.18 99.73
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10. retro_cjac_3570 97.69 57.99
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11. retro_cjac_4019 88.32 52.85
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Download FASTA sequences of all ENSCJAG00000004644 retrocopies