RetrogeneDB ID: retro_mputfur_633

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896928.1:13327523..13328142(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PPP2CA
• Ensembl ID: ENSMPUG00000010169
• Aliases: None
• Description: protein phosphatase 2, catalytic subunit, alpha isozyme [Source:HGNC Symbol;Acc:9299]

Sequence

>retro_mputfur_633
GACAACTAGGTGTTCCCCAAGGAGCTGCACCAAGGGGCTGAGCAGCTGAACGATGATAAATAGCTTAATGAGAACGATGT
GCAGTGCTGTGCAGAAAGGCTAAGGAAATTTTAACAAAAGAATCAGAAGTGCAAGAGGTTCATTGTCTCGTTCCACTGCG
TGGAGATGTGCATGGTCAATTCCATGATCTCATGGAACTCTTTAAAATTGGTAGAAAATCACCAGGTACAAACTATCTAT
CTATGGGAGACAGTGTAGACATAAGCTATCCTAATTGGAGACTGTGACTCTCCTTGTGGTCTTAAAGGTGTGTTACCTAG
AATGCATTACAATATTGGGAGGAAACCATGAGAGTCGATGAGTTACCCAAGTATATGGCTTTTATGATGAATGTCTGTGA
AAGCATGGAAATGCCAAAGTGTGGAAATATTTTACAGATCTATTTGATTATCCTCCACTTACGGCACTAGTAGATGGACA
GATATTCAACCTTCATGGTGGCCTCTCTCCCTTCCTAGATACACTGGATCATAGAGGAGCCTCGAATCATTTACAAGAAG
TTCCACAGGAAAGGTCCAGTGTGTGATCTGTAGTGGGCAGATCAGGTGATCGTGGTGGG

Alignment

ORF - retro_mputfur_633 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.56 %
• Parental protein coverage: 66.99 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  DEKVFTKELDQWIEQLNECKQLSESQVKS-LCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFR
          D..VF.KEL.Q..EQLN..K.L.E..V...LC.KAKEILTKES.VQEV.C.V...GDVHGQFHDLMELF.
Retrocopy DN*VFPKELHQGAEQLNDDK*LNENDVQC<LCRKAKEILTKESEVQEVHCLVPLRGDVHGQFHDLMELFK

Parental  IGGKSPDTNYLFMGDYVDRGYYS-VETVTLLVALKVRYRERITILRGNHESRQITQVYGFYDECLRKYGN
          IG.KSP.TNYL.MGD.VD..Y....ETVTLLV.LKV.Y.E.ITIL.GNHESR..TQVYGFYDECL.K.GN
Retrocopy IGRKSPGTNYLSMGDSVDISYPN<LETVTLLVVLKVCYLECITILGGNHESR*VTQVYGFYDECL*KHGN

Parental  ANVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHE-GPMCDLLWSD-PDDRG
          A.VWKYFTDLFDY.PLTALVDGQIF.LHGGLSP..DTLDH..A...LQEVP.E.GP.CDL.W.D...DRG
Retrocopy AKVWKYFTDLFDYPPLTALVDGQIFNLHGGLSPFLDTLDHRGASNHLQEVPQE>GPVCDL*WAD<SGDRG

Parental  G
          G
Retrocopy G

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_633 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_633 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000002653	1 retrocopy	retro_acar_69,
Bos taurus	ENSBTAG00000000469	1 retrocopy	retro_btau_1754,
Dasypus novemcinctus	ENSDNOG00000013011	4 retrocopies	retro_dnov_1025, retro_dnov_1844, retro_dnov_2100, retro_dnov_2122,
Echinops telfairi	ENSETEG00000007561	2 retrocopies	retro_etel_1233, retro_etel_659,
Felis catus	ENSFCAG00000029685	1 retrocopy	retro_fcat_1086,
Mustela putorius furo	ENSMPUG00000010169	1 retrocopy	retro_mputfur_633 ,
Sorex araneus	ENSSARG00000005447	3 retrocopies	retro_sara_296, retro_sara_385, retro_sara_715,
Sarcophilus harrisii	ENSSHAG00000016632	3 retrocopies	retro_shar_313, retro_shar_428, retro_shar_471,
Tursiops truncatus	ENSTTRG00000016859	1 retrocopy	retro_ttru_1584,