RetrogeneDB ID: retro_mputfur_340

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896904.1:15922532..15923141(+)
• Located in intron of: ENSMPUG00000006834

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF128
• Ensembl ID: ENSMPUG00000003695
• Aliases: None
• Description: ring finger protein 128, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:21153]

Sequence

>retro_mputfur_340
TCTTGGCTGGCCCTCATCGAACGGGGAGGCTGTACTTTTACACATAAGATCAATGTGGCAGCAGAGAAGGGAGCAAATGG
GGTGATCATCTATAACTATCCAGGTACAGGCAACAAAGTGTTTCCTATGTCTCATCAGGGAACAGAAAACATAGTTGCTG
TGATGATAGGCAACTTGAAAGGCATGGAACTTTTGCACTTGATTCAGAAGGGAGTCTATGTGACAATCATCATCGAAGTG
GGGAGAATGCATCTGCCATGGCTGAGCCATTATATCATGTCTCTGTTCACCTTCCTGGCTGCCACAGTTGCCTACCTTTT
CTTGTACTGTGCGTGGAGACCTAGGGTGCCCAATTCTTCCACCAGGAGGCGAAGACAGATAAAAGCAGATGTGAAGAAAG
CTATTGGTCAGCTTCAACTGCGCGTGCTCAAAGAAGGGGATAAGGAACTAGATCCAGATGAAGACAGTTGTGTTGTTTGC
TTTGACATTTACAAACCCCAAGATGTAGTACGTATTTTAACTTGCAAACATTTTTTCCATAAGGCATGCATTGACCCCTG
GCTTTTAGCCCATAGGACATGCCCCATGTGCAAGTGTGATATTTTGAAA

Alignment

ORF - retro_mputfur_340 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.15 %
• Parental protein coverage: 63.33 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAGDIVAIMIGNLKGTKILQSIQ
          SWLALI.RGG.CTF..KI..A.E.GA.G..I.N.PGT.N.V.PMSH.G...IVA.MIGNLKG...L..IQ
Retrocopy SWLALIERGG-CTFTHKINVAAEKGANGVIIYNYPGTGNKVFPMSHQGTENIVAVMIGNLKGMELLHLIQ

Parental  RGIQVTMVIEVGKKHGPWVNHYSIFFVSVSFFIITAATVGYFIFYSARRLRNARAQSRKQKKLTLSLIFT
          .G..VT..IEVG..H.PW..HY........F...T.A..........R...N.....R.Q.K........
Retrocopy KGVYVTIIIEVGRMHLPWLSHYIMSL--FTFLAATVAYLFLYCAWRPR-VPNSSTRRRRQIKADVKK--A

Parental  YSSCQLGVFLLGIEEIGPDGDSCAVCIELYKPNDLVRILTCNHIFHKTCVDPWLLEHRTCPMCKCDILK
          ....QL.V...G..E..PD.DSC.VC...YKP.D.VRILTC.H.FHK.C.DPWLL.HRTCPMCKCDILK
Retrocopy IGQLQLRVLKEGDKELDPDEDSCVVCFDIYKPQDVVRILTCKHFFHKACIDPWLLAHRTCPMCKCDILK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_340 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_340 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000022920	1 retrocopy	retro_btau_1358,
Loxodonta africana	ENSLAFG00000002816	1 retrocopy	retro_lafr_946,
Macropus eugenii	ENSMEUG00000001567	1 retrocopy	retro_meug_1139,
Mustela putorius furo	ENSMPUG00000003695	1 retrocopy	retro_mputfur_340 ,
Mustela putorius furo	ENSMPUG00000010940	1 retrocopy	retro_mputfur_95,
Oryctolagus cuniculus	ENSOCUG00000012328	1 retrocopy	retro_ocun_37,
Pan troglodytes	ENSPTRG00000022151	1 retrocopy	retro_ptro_2651,
Sus scrofa	ENSSSCG00000012551	1 retrocopy	retro_sscr_597,
Ictidomys tridecemlineatus	ENSSTOG00000022922	2 retrocopies	retro_itri_1254, retro_itri_1255,
Tursiops truncatus	ENSTTRG00000007536	1 retrocopy	retro_ttru_6,