RetrogeneDB ID: | retro_nleu_1412 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397292.1:1967970..1968193(-) | ||
Located in intron of: | ENSNLEG00000000780 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COX7A2 | ||
Ensembl ID: | ENSNLEG00000004949 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.55 % |
Parental protein coverage: | 65.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VFSCGGCWSVTAKMLRNLLALRQIGQRTISTASRRH-FKNKVPE-KQKLFQEDDEIPLYLKGGIADALLY |
..SC.G.W.VT...........Q..QRT.S.AS.RH.F.NK.PE.K.KLFQE...IP..LKGG.AD.LLY | |
Retrocopy | LWSCQGSWAVTEPRCCRICWHCQVAQRTMSIASCRH<FENKGPE<KHKLFQEKNGIPVHLKGGRADDLLY |
Parental | RATMILT |
RATM.L. | |
Retrocopy | RATMVLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014453 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005096 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000010305 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007404 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000015425 | 2 retrocopies | |
Homo sapiens | ENSG00000112695 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000005865 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000002313 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015747 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000004949 | 2 retrocopies |
retro_nleu_1412 , retro_nleu_735,
|
Nomascus leucogenys | ENSNLEG00000016666 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016781 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010401 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000042903 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000004480 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000002536 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000007294 | 7 retrocopies | |
Tursiops truncatus | ENSTTRG00000007874 | 1 retrocopy |