Parental gene:

COX7A2, ENSCJAG00000010305

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:4:73505345..73510298(-)


>ENSCJAG00000010305
ATGCTTACGCAAGACTTGGAGGTAGTTCCGGTTCCGGCTTGGCGATTTTCATTCCTGGTGTTCAGTTGTCGCGGTTGGTG
GTCAGTAACCGCCAAGATGCTGCGGAATCTGCTGGCTCTTCGTCAGATTGGGCAGAGGACCATAAGCACTACTTCCCGCA
TGCATTTTAAAAATAGAGTTGCAGAGAAACAAAAGCTCTTCCAGGAGGAAGATGGAATTCCAGTGTATCTAAAGGGTGGG
ATAGTTGATGTCATCCTGTATAGAGCCACTATGATTCTTACAGTTGGTGGAGCAGCATATGCCATATATCACCTGGCTGT
GGCTTCATTTCCCAAGAAGCAGGATTGA

Library Parental gene expression (RPM)
SRP051959_colon 17 .86 RPM
SRP051959_heart 8 .79 RPM
SRP051959_kidney 19 .77 RPM
SRP051959_liver 19 .75 RPM
SRP051959_lung 7 .09 RPM
SRP051959_lymph_node 8 .01 RPM
SRP051959_skeletal_muscle 7 .51 RPM
SRP051959_spleen 9 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014453 ortholog_one2one 1 retrogene
retro_amel_723,
Bos taurus ENSBTAG00000005096 ortholog_one2one 6 retrogenes
retro_btau_1071, retro_btau_1230, retro_btau_1436, retro_btau_1469, retro_btau_1703, retro_btau_507,
Callithrix jacchus ENSCJAG00000014705 within_species_paralog 1 retrogene
retro_cjac_1492,
Cavia porcellus ENSCPOG00000007404 ortholog_one2one 2 retrogenes
retro_cpor_1300, retro_cpor_527,
Dipodomys ordii ENSDORG00000015425 ortholog_one2one 2 retrogenes
retro_dord_701, retro_dord_790,
Homo sapiens ENSG00000112695 ortholog_one2one 2 retrogenes
retro_hsap_1434, retro_hsap_2961,
Gorilla gorilla ENSGGOG00000005865 ortholog_one2one 2 retrogenes
retro_ggor_1104, retro_ggor_2051,
Loxodonta africana ENSLAFG00000002313 ortholog_one2one 1 retrogene
retro_lafr_811,
Microcebus murinus ENSMICG00000015747 ortholog_one2one 3 retrogenes
retro_mmur_381, retro_mmur_548, retro_mmur_799,
Nomascus leucogenys ENSNLEG00000004949 ortholog_one2one 2 retrogenes
retro_nleu_1412, retro_nleu_735,
Pongo abelii ENSPPYG00000016781 ortholog_one2one 2 retrogenes
retro_pabe_1187, retro_pabe_2456,
Pteropus vampyrus ENSPVAG00000010401 ortholog_one2one 6 retrogenes
retro_pvam_1144, retro_pvam_1408, retro_pvam_443, retro_pvam_57, retro_pvam_656, retro_pvam_741,
Rattus norvegicus ENSRNOG00000042903 ortholog_one2many 1 retrogene
retro_rnor_52,
Sus scrofa ENSSSCG00000004480 ortholog_one2one 1 retrogene
retro_sscr_296,
Ictidomys tridecemlineatus ENSSTOG00000002536 ortholog_one2one 5 retrogenes
retro_itri_435, retro_itri_464, retro_itri_608, retro_itri_890, retro_itri_892,
Tupaia belangeri ENSTBEG00000007294 ortholog_one2one 7 retrogenes
retro_tbel_1177, retro_tbel_178, retro_tbel_3617, retro_tbel_4102, retro_tbel_4330, retro_tbel_738, retro_tbel_781,
Tursiops truncatus ENSTTRG00000007874 ortholog_one2one 1 retrogene
retro_ttru_669,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1523 76.47 73.91
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2. retro_cjac_4129 71.08 72.17
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Download FASTA sequences of all ENSCJAG00000010305 retrocopies