RetrogeneDB ID: | retro_obra_3 | ||
Retrocopylocation | Organism: | Oryza brachyantha | |
Coordinates: | 3:29576752..29577577(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OB03G48920 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OB0038G10090 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.08 % |
Parental protein coverage: | 73.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGG |
KDY.DPPP.PL.D.GEL..WS.YRA.IAEF.ATLLF..ITV.TVIG.K.QS.A..C.G.G.LGIAWAFGG | |
Retrocopy | KDYHDPPPTPLVDAGELGKWSLYRATIAEFTATLLFVCITVTTVIGHKRQS-AEACAGAGVLGIAWAFGG |
Parental | MIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMK-HQYNANGGGA |
.IF.LVYCTAGISGGHINPAVTF..LLAR.VS..RA..Y..AQCLG...G.G.........QY...GGGA | |
Retrocopy | IIFVLVYCTAGISGGHINPAVTFAMLLARRVSLPRAALYMIAQCLGAMCGAGLARALHGGRQYARHGGGA |
Parental | NVVASGYSNGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGIN |
N....GYS.G....AE..GTFVLVYTV.SATDPKR.ARDSHVPVLAPLPIG.AV..VHLATIPITGTGIN | |
Retrocopy | NELVEGYSAGAGFAAEMVGTFVLVYTVLSATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGIN |
Parental | PARSIGAAVIYNQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALGS |
PARS.G.AV.YN..KAW...W.FW.GPF.GA.AA..YHQYILR.AA.KA..S | |
Retrocopy | PARSLGPAVVYNGSKAWKEQWMFWVGPFAGAGAAILYHQYILRGAAAKAFAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA009362 | 1 retrocopy | |
Oryza longistaminata | KN540828.1_FG001 | 1 retrocopy | |
Leersia perrieri | LPERR04G03430 | 1 retrocopy | |
Oryza brachyantha | OB0038G10090 | 1 retrocopy |
retro_obra_3 ,
|
Oryza barthii | OBART04G05050 | 1 retrocopy | |
Oryza glumaepatula | OGLUM04G04240 | 1 retrocopy | |
Oryza meridionalis | OMERI04G05010 | 1 retrocopy | |
Oryza nivara | ONIVA04G03300 | 1 retrocopy | |
Oryza punctata | OPUNC04G04310 | 1 retrocopy | |
Oryza rufipogon | ORUFI04G05780 | 1 retrocopy | |
Oryza sativa japonica | OS04G0233400 | 1 retrocopy |