RetrogeneDB ID: | retro_olon_7 | ||
Retrocopylocation | Organism: | Longstamen rice (Oryza longistaminata) | |
Coordinates: | KN539288.1:76677..77526(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | KN539288.1_FG012 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | KN540828.1_FG001 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.17 % |
Parental protein coverage: | 92.91 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PKDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFG |
PKDY.DPPPAPL.D.GEL..WS.YRA.IAEF.ATLL...I.V.TVIG.K.QS.....GG.G.LGIAWAFG | |
Retrocopy | PKDYQDPPPAPLVDTGELGKWSLYRAAIAEFTATLLLVCISVSTVIGEKRQSGE---GGAGVLGIAWAFG |
Parental | GMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAVMYIVAQCLGGIVGVGIVKGIMKH-QYNANGGG |
G.IF.LVYCTAGISGGH.NPAVTF...LAR.VS..RA..Y..AQC.G...G.G.........QY...GGG | |
Retrocopy | GLIFVLVYCTAGISGGHMNPAVTFAMVLARRVSLPRAALYTMAQCVGAVCGAGLARAMHGGGQYARHGGG |
Parental | ANMVASGYSTGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGI |
AN..A.GYS.G....AE..GTFVLVYTVFSATDPKR.ARDSHVPVLAPLPIG.AV..VHLATIPITGTGI | |
Retrocopy | ANELAAGYSAGAGVAAEMVGTFVLVYTVFSATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGI |
Parental | NPARSIGAAVIY---NQKKAWDDHWIFWAGPFIGALAAAAYHQYILRAAAIKALGS |
NPARS.G.A.........KAW...WIFW.GPF.GA.AA..YH.YILR.AA.KA..S | |
Retrocopy | NPARSLGPALVLGLGTTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKAFAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA009362 | 1 retrocopy | |
Oryza longistaminata | KN540828.1_FG001 | 1 retrocopy |
retro_olon_7 ,
|
Leersia perrieri | LPERR04G03430 | 1 retrocopy | |
Oryza brachyantha | OB0038G10090 | 1 retrocopy | |
Oryza barthii | OBART04G05050 | 1 retrocopy | |
Oryza glumaepatula | OGLUM04G04240 | 1 retrocopy | |
Oryza meridionalis | OMERI04G05010 | 1 retrocopy | |
Oryza nivara | ONIVA04G03300 | 1 retrocopy | |
Oryza punctata | OPUNC04G04310 | 1 retrocopy | |
Oryza rufipogon | ORUFI04G05780 | 1 retrocopy | |
Oryza sativa japonica | OS04G0233400 | 1 retrocopy |