RetrogeneDB ID: | retro_pabe_2739 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:60435769..60436016(-) | ||
Located in intron of: | ENSPPYG00000015486 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2V2 | ||
Ensembl ID: | ENSPPYG00000018575 | ||
Aliases: | None | ||
Description: | Ubiquitin-conjugating enzyme E2 variant 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5R6C9] |
Percent Identity: | 54.12 % |
Parental protein coverage: | 56.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | GTVSWGLEDDED-MTLTRWTGMIIGPPRTNYENRIYSLKVEC-GPKYPEAPPSVRFVTKINMNGINNS-S |
G.VS.GLE.DE...TL.RWTG.IIG.PRTN..N.I..LK..C..PKYPEA.....FV.K...N.I.NS.S | |
Retrocopy | GLVSCGLEGDEE<KTLSRWTGIIIGSPRTNLKNKICRLKLAC>APKYPEASSLNTFVAKVYVN*ISNS>S |
Parental | GMVDARSIPVLAKWQ |
..VD...I.VL.K.. | |
Retrocopy | EIVDELRIVVLVKME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 71 .16 RPM |
SRP007412_cerebellum | 0 .12 RPM | 55 .33 RPM |
SRP007412_heart | 0 .06 RPM | 22 .85 RPM |
SRP007412_kidney | 0 .00 RPM | 30 .33 RPM |
SRP007412_liver | 0 .00 RPM | 23 .78 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_902 |
Sus scrofa | retro_sscr_524 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000023218 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016581 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010191 | 10 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006933 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018575 | 1 retrocopy |
retro_pabe_2739 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000021769 | 2 retrocopies |