RetrogeneDB ID: | retro_ptro_2114 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 4:176841483..176842323(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MORF4L1 | ||
Ensembl ID: | ENSPTRG00000007351 | ||
Aliases: | None | ||
Description: | mortality factor 4 like 1 [Source:HGNC Symbol;Acc:16989] |
Percent Identity: | 86.07 % |
Parental protein coverage: | 77.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VHHPLLTSSWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKN |
.H.......WDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMR.AAPGKKTSGL............ | |
Retrocopy | IHYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMRWAAPGKKTSGLXXXXXXXXXXXX |
Parental | KQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFY |
.......GDGGSTSETPQPP.KKRA.VDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFY | |
Retrocopy | XXXXXXXGDGGSTSETPQPPQKKRAQVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFY |
Parental | LPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAP |
LPA.KNVDSILEDYANYKKS.GNTDNKEYAVNEVVAGIKEYFN.MLGTQLLYKFERPQYAEILAD.PDAP | |
Retrocopy | LPADKNVDSILEDYANYKKSHGNTDNKEYAVNEVVAGIKEYFNLMLGTQLLYKFERPQYAEILADCPDAP |
Parental | MSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVAPPEYHRKAV |
MSQVYG.PHLLRL.V.IGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVA.PEYH.KAV | |
Retrocopy | MSQVYGVPHLLRLSVQIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVALPEYHWKAV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 9 .21 RPM | 218 .77 RPM |
SRP007412_cerebellum | 5 .16 RPM | 275 .35 RPM |
SRP007412_heart | 3 .47 RPM | 190 .24 RPM |
SRP007412_kidney | 2 .14 RPM | 171 .95 RPM |
SRP007412_liver | 2 .46 RPM | 120 .00 RPM |
SRP007412_testis | 27 .72 RPM | 893 .86 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3125 |
Gorilla gorilla | retro_ggor_2141 |
Pongo abelii | retro_pabe_2581 |