Parental gene:

ENSCJAG00000002214

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:18529959..18562210(+)


>ENSCJAG00000002214
ATGGCGCCGAAGCAGGACCCGAAGCCTAAATTCCAGGAGGGTGAGCGAGTGCTGTGCTTTCATGGGCCACTTCTGTATGA
AGCAAAGTGTGTAAAGGTTGCCATAAAGGACAAACAAGTGAAATACTTCATACATTACAGTGGTTGGAATAAAAAAAGTG
CTGTGAGGCCCAGGCGCTCTGAAAAATCTTTGAAGACACATGAGGATATTGTAGCCCTTTTTCCTGTTCCTGAAGGAGCT
CCCTCAGTACACCACCCCCTCCTGACCTCTAGTTGGGATGAGTGGGTTCCGGAGAGCCGAGTACTCAAATATGTGGACAC
CAATTTGCAGAAACAGCGAGAACTTCAAAAAGCCAATCAGGAGCAGTATGCAGAGGGGAAGATGAGAGGGGCTGCCCCAG
GAAAGAAGACATCTGGTCTGCAACAGAAAAATGTTGAAGTGAAAACAAAAAAGAACAAACAGAAAACACCTGGAAATGGA
GATGGTGGCAGTACCAGTGAGACTCCTCAGCCTCCTCGGAAGAAAAGGGCCCGGGTAGATCCTACTGTTGAAAATGAGGA
AACATTCATGAACAGAGTTGAAGTTAAAGTAAAGATTCCTGAAGAACTAAAACCATGGCTTGTTGATGACTGGGACTTAA
TTACCAGGCAAAAGCAGCTCTTTTATCTTCCTGCCAAGAAGAATGTGGATTCCATTCTTGAGGATTATGCAAATTACAAG
AAATCTCGTGGAAACACAGATAATAAGGAGTATGCGGTTAATGAAGTTGTGGCAGGGATAAAAGAATACTTCAATGTAAT
GTTGGGTACCCAGCTACTCTACAAATTTGAGAGACCACAGTATGCCGAAATTCTTGCAGATCACCCTGATGCACCCATGT
CCCAGGTGTATGGAGCGCCACATCTACTGAGACTATTTGTACGAATTGGAGCAATGTTGGCCTATACACCTCTGGATGAG
AAGAGCCTTGCTTTATTACTGAATTATCTTCACGATTTCCTAAAGTACCTGGCAAAGAATTCTGCAACTTTATTTAGTGC
CAGTGATTATGAAGTGGCTCCTCCTGAGTACCATCGGAAAGCTGTGTGA

Library Parental gene expression (RPM)
SRP051959_colon 41 .34 RPM
SRP051959_heart 63 .99 RPM
SRP051959_kidney 72 .19 RPM
SRP051959_liver 40 .90 RPM
SRP051959_lung 58 .89 RPM
SRP051959_lymph_node 43 .58 RPM
SRP051959_skeletal_muscle 34 .22 RPM
SRP051959_spleen 52 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012344 ortholog_one2many 1 retrogene
retro_amel_124,
Bos taurus ENSBTAG00000010988 ortholog_many2many 1 retrogene
retro_btau_137,
Canis familiaris ENSCAFG00000014113 ortholog_one2many 1 retrogene
retro_cfam_20,
Cavia porcellus ENSCPOG00000003778 possible_ortholog 3 retrogenes
retro_cpor_114, retro_cpor_1409, retro_cpor_915,
Equus caballus ENSECAG00000008091 possible_ortholog 1 retrogene
retro_ecab_62,
Felis catus ENSFCAG00000012197 possible_ortholog 1 retrogene
retro_fcat_75,
Homo sapiens ENSG00000185787 ortholog_one2many 3 retrogenes
retro_hsap_309, retro_hsap_3125, retro_hsap_850,
Gorilla gorilla ENSGGOG00000016826 ortholog_one2many 3 retrogenes
retro_ggor_125, retro_ggor_2141, retro_ggor_694,
Loxodonta africana ENSLAFG00000009851 ortholog_one2many 1 retrogene
retro_lafr_62,
Myotis lucifugus ENSMLUG00000001756 possible_ortholog 1 retrogene
retro_mluc_324,
Macaca mulatta ENSMMUG00000022926 ortholog_one2many 1 retrogene
retro_mmul_1064,
Monodelphis domestica ENSMODG00000011517 possible_ortholog 2 retrogenes
retro_mdom_150, retro_mdom_158,
Mustela putorius furo ENSMPUG00000015429 ortholog_one2many 1 retrogene
retro_mputfur_180,
Mus musculus ENSMUSG00000062270 ortholog_one2many 9 retrogenes
retro_mmus_1454, retro_mmus_1697, retro_mmus_176, retro_mmus_1771, retro_mmus_1825, retro_mmus_1833, retro_mmus_2500, retro_mmus_2612, retro_mmus_289,
Nomascus leucogenys ENSNLEG00000008678 ortholog_one2many 3 retrogenes
retro_nleu_417, retro_nleu_445, retro_nleu_51,
Oryctolagus cuniculus ENSOCUG00000015117 possible_ortholog 2 retrogenes
retro_ocun_108, retro_ocun_21,
Otolemur garnettii ENSOGAG00000006047 ortholog_one2many 4 retrogenes
retro_ogar_1594, retro_ogar_2616, retro_ogar_2896, retro_ogar_50,
Pongo abelii ENSPPYG00000006703 ortholog_one2many 4 retrogenes
retro_pabe_1046, retro_pabe_201, retro_pabe_2581, retro_pabe_695,
Pan troglodytes ENSPTRG00000007351 ortholog_one2many 3 retrogenes
retro_ptro_2114, retro_ptro_47, retro_ptro_591,
Rattus norvegicus ENSRNOG00000014410 ortholog_one2many 6 retrogenes
retro_rnor_1076, retro_rnor_2270, retro_rnor_2357, retro_rnor_374, retro_rnor_793, retro_rnor_980,
Sorex araneus ENSSARG00000004519 possible_ortholog 1 retrogene
retro_sara_15,
Sarcophilus harrisii ENSSHAG00000018402 possible_ortholog 1 retrogene
retro_shar_393,
Sus scrofa ENSSSCG00000001769 ortholog_one2many 1 retrogene
retro_sscr_93,
Ictidomys tridecemlineatus ENSSTOG00000013294 ortholog_one2many 3 retrogenes
retro_itri_111, retro_itri_1545, retro_itri_1608,
Tupaia belangeri ENSTBEG00000001897 possible_ortholog 8 retrogenes
retro_tbel_1694, retro_tbel_1704, retro_tbel_4638, retro_tbel_518, retro_tbel_550, retro_tbel_69, retro_tbel_753, retro_tbel_76,
Tursiops truncatus ENSTTRG00000016606 possible_ortholog 1 retrogene
retro_ttru_472,
Vicugna pacos ENSVPAG00000008847 possible_ortholog 1 retrogene
retro_vpac_229,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2113 84.00 75.54
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2. retro_cjac_2280 92.92 100.00
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3. retro_cjac_2574 82.82 100.00
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4. retro_cjac_3026 88.64 94.74
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5. retro_cjac_3179 80.95 51.08
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Download FASTA sequences of all ENSCJAG00000002214 retrocopies