Parental gene: | ENSCJAG00000002214 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 10:18529959..18562210(+) |
>ENSCJAG00000002214
ATGGCGCCGAAGCAGGACCCGAAGCCTAAATTCCAGGAGGGTGAGCGAGTGCTGTGCTTTCATGGGCCACTTCTGTATGA
AGCAAAGTGTGTAAAGGTTGCCATAAAGGACAAACAAGTGAAATACTTCATACATTACAGTGGTTGGAATAAAAAAAGTG
CTGTGAGGCCCAGGCGCTCTGAAAAATCTTTGAAGACACATGAGGATATTGTAGCCCTTTTTCCTGTTCCTGAAGGAGCT
CCCTCAGTACACCACCCCCTCCTGACCTCTAGTTGGGATGAGTGGGTTCCGGAGAGCCGAGTACTCAAATATGTGGACAC
CAATTTGCAGAAACAGCGAGAACTTCAAAAAGCCAATCAGGAGCAGTATGCAGAGGGGAAGATGAGAGGGGCTGCCCCAG
GAAAGAAGACATCTGGTCTGCAACAGAAAAATGTTGAAGTGAAAACAAAAAAGAACAAACAGAAAACACCTGGAAATGGA
GATGGTGGCAGTACCAGTGAGACTCCTCAGCCTCCTCGGAAGAAAAGGGCCCGGGTAGATCCTACTGTTGAAAATGAGGA
AACATTCATGAACAGAGTTGAAGTTAAAGTAAAGATTCCTGAAGAACTAAAACCATGGCTTGTTGATGACTGGGACTTAA
TTACCAGGCAAAAGCAGCTCTTTTATCTTCCTGCCAAGAAGAATGTGGATTCCATTCTTGAGGATTATGCAAATTACAAG
AAATCTCGTGGAAACACAGATAATAAGGAGTATGCGGTTAATGAAGTTGTGGCAGGGATAAAAGAATACTTCAATGTAAT
GTTGGGTACCCAGCTACTCTACAAATTTGAGAGACCACAGTATGCCGAAATTCTTGCAGATCACCCTGATGCACCCATGT
CCCAGGTGTATGGAGCGCCACATCTACTGAGACTATTTGTACGAATTGGAGCAATGTTGGCCTATACACCTCTGGATGAG
AAGAGCCTTGCTTTATTACTGAATTATCTTCACGATTTCCTAAAGTACCTGGCAAAGAATTCTGCAACTTTATTTAGTGC
CAGTGATTATGAAGTGGCTCCTCCTGAGTACCATCGGAAAGCTGTGTGA
ATGGCGCCGAAGCAGGACCCGAAGCCTAAATTCCAGGAGGGTGAGCGAGTGCTGTGCTTTCATGGGCCACTTCTGTATGA
AGCAAAGTGTGTAAAGGTTGCCATAAAGGACAAACAAGTGAAATACTTCATACATTACAGTGGTTGGAATAAAAAAAGTG
CTGTGAGGCCCAGGCGCTCTGAAAAATCTTTGAAGACACATGAGGATATTGTAGCCCTTTTTCCTGTTCCTGAAGGAGCT
CCCTCAGTACACCACCCCCTCCTGACCTCTAGTTGGGATGAGTGGGTTCCGGAGAGCCGAGTACTCAAATATGTGGACAC
CAATTTGCAGAAACAGCGAGAACTTCAAAAAGCCAATCAGGAGCAGTATGCAGAGGGGAAGATGAGAGGGGCTGCCCCAG
GAAAGAAGACATCTGGTCTGCAACAGAAAAATGTTGAAGTGAAAACAAAAAAGAACAAACAGAAAACACCTGGAAATGGA
GATGGTGGCAGTACCAGTGAGACTCCTCAGCCTCCTCGGAAGAAAAGGGCCCGGGTAGATCCTACTGTTGAAAATGAGGA
AACATTCATGAACAGAGTTGAAGTTAAAGTAAAGATTCCTGAAGAACTAAAACCATGGCTTGTTGATGACTGGGACTTAA
TTACCAGGCAAAAGCAGCTCTTTTATCTTCCTGCCAAGAAGAATGTGGATTCCATTCTTGAGGATTATGCAAATTACAAG
AAATCTCGTGGAAACACAGATAATAAGGAGTATGCGGTTAATGAAGTTGTGGCAGGGATAAAAGAATACTTCAATGTAAT
GTTGGGTACCCAGCTACTCTACAAATTTGAGAGACCACAGTATGCCGAAATTCTTGCAGATCACCCTGATGCACCCATGT
CCCAGGTGTATGGAGCGCCACATCTACTGAGACTATTTGTACGAATTGGAGCAATGTTGGCCTATACACCTCTGGATGAG
AAGAGCCTTGCTTTATTACTGAATTATCTTCACGATTTCCTAAAGTACCTGGCAAAGAATTCTGCAACTTTATTTAGTGC
CAGTGATTATGAAGTGGCTCCTCCTGAGTACCATCGGAAAGCTGTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 52 .25 RPM |
| SRP051959_skeletal_muscle | 34 .22 RPM |
| SRP051959_lymph_node | 43 .58 RPM |
| SRP051959_lung | 58 .89 RPM |
| SRP051959_liver | 40 .90 RPM |
| SRP051959_kidney | 72 .19 RPM |
| SRP051959_heart | 63 .99 RPM |
| SRP051959_colon | 41 .34 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012344 | ortholog_one2many | 1 retrogene | |
| Bos taurus | ENSBTAG00000010988 | ortholog_many2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000014113 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000003778 | possible_ortholog | 3 retrogenes | |
| Equus caballus | ENSECAG00000008091 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000012197 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000185787 | ortholog_one2many | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000016826 | ortholog_one2many | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000009851 | ortholog_one2many | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000001756 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000022926 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000011517 | possible_ortholog | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015429 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000062270 | ortholog_one2many | 9 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000008678 | ortholog_one2many | 3 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000015117 | possible_ortholog | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000006047 | ortholog_one2many | 4 retrogenes | |
| Pongo abelii | ENSPPYG00000006703 | ortholog_one2many | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000007351 | ortholog_one2many | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000014410 | ortholog_one2many | 6 retrogenes | |
| Sorex araneus | ENSSARG00000004519 | possible_ortholog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000018402 | possible_ortholog | 1 retrogene | |
| Sus scrofa | ENSSSCG00000001769 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000013294 | ortholog_one2many | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000001897 | possible_ortholog | 8 retrogenes | |
| Tursiops truncatus | ENSTTRG00000016606 | possible_ortholog | 1 retrogene | |
| Vicugna pacos | ENSVPAG00000008847 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_2113 | 84.00 | 75.54 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2280 | 92.92 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_2574 | 82.82 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3026 | 88.64 | 94.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_cjac_3179 | 80.95 | 51.08 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000002214 retrocopies