RetrogeneDB ID: | retro_ptro_602 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 11:40139984..40140435(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZCCHC9 | ||
Ensembl ID: | ENSPTRG00000017047 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.23 % |
Parental protein coverage: | 55.72 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAK-CFVC |
QAAK...MVCFHCRKPGH..ADCP.ALENQD.GT..C...GS.E....K..AKV..AL..FPFAK..FVC | |
Retrocopy | QAAKRKTMVCFHCRKPGHTTADCPVALENQDTGTATCSESGSMERKMIKRRAKVALALN*FPFAK<IFVC |
Parental | G-EMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSE-RMVTVGRWAKGMSADYEEILDVPK |
..EM..LSRSCPD.PKGL.ADGGGC.LC.S.E..KKDCPESQNS...MVTV..W.KG.SAD.EEI....K | |
Retrocopy | R<EMRQLSRSCPDHPKGLCADGGGCQLCCSMEYFKKDCPESQNSDFGMVTVDCWSKGVSADSEEIG*L-K |
Parental | PQKPKTKIPKVVNF |
.QK.KTKIPK.V.F | |
Retrocopy | LQKSKTKIPKIVIF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .45 RPM |
SRP007412_cerebellum | 0 .04 RPM | 9 .68 RPM |
SRP007412_heart | 0 .00 RPM | 11 .08 RPM |
SRP007412_kidney | 0 .00 RPM | 18 .07 RPM |
SRP007412_liver | 0 .00 RPM | 23 .57 RPM |
SRP007412_testis | 0 .00 RPM | 42 .36 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_706 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005265 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000008703 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000005268 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000019486 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000003838 | 2 retrocopies | |
Homo sapiens | ENSG00000131732 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013790 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001886 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020655 | 1 retrocopy | |
Mus musculus | ENSMUSG00000021621 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002543 | 6 retrocopies | |
Pongo abelii | ENSPPYG00000015604 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000017047 | 2 retrocopies |
retro_ptro_1205, retro_ptro_602 ,
|
Rattus norvegicus | ENSRNOG00000014927 | 2 retrocopies | |
Sorex araneus | ENSSARG00000008580 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000014504 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001407 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000013796 | 1 retrocopy |