RetrogeneDB ID: | retro_etel_325 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_5378:68213..68833(-) | ||
Located in intron of: | ENSETEG00000009245 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZCCHC9 | ||
Ensembl ID: | ENSETEG00000003838 | ||
Aliases: | None | ||
Description: | zinc finger, CCHC domain containing 9 [Source:HGNC Symbol;Acc:25424] |
Percent Identity: | 84.76 % |
Parental protein coverage: | 77.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MTRWARVTATANRRPLAATPWQDMKKGPKDGGSQSQAKGKSF-EAHGLPLKNDTLQTKHKRNKKKKEYLN |
MTRWARV.ATAN.RPLAATPWQDMKK.P.DGGSQSQAKGKS..EAHGL..KND.LQ...........YLN | |
Retrocopy | MTRWARVPATANKRPLAATPWQDMKKEPNDGGSQSQAKGKSL<EAHGL--KNDALQXXXXXXXXXXXYLN |
Parental | EDVNGFMDYLRQSSQVAHNGERGAAVSAEIREDIALALKKDSRREGRRLKRQTAKKNAMVCFHCRQPGHG |
EDVNGFM.YLRQSSQVAHNGERGAAVSAEIREDIALALKKDSRREGRRLKRQTAKKNA.VCFH.RQPGHG | |
Retrocopy | EDVNGFMEYLRQSSQVAHNGERGAAVSAEIREDIALALKKDSRREGRRLKRQTAKKNAVVCFHRRQPGHG |
Parental | VADCPAALDTQDTGTGICYRCGSTEHEITKCKAKVDIALGEFPFAKCFVCGEMGHLSRSCPENSKGVYAD |
VADCPAALDTQ.TGTG..Y..GSTEHEITKCKAKV..ALGEFPFAKCF.CGEMGHLSRSCPEN.KGVYAD | |
Retrocopy | VADCPAALDTQETGTGRGYC*GSTEHEITKCKAKVATALGEFPFAKCFMCGEMGHLSRSCPENPKGVYAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |