Parental gene:

ZCCHC9, ENSCJAG00000019486

Aliases:None
Description:zinc finger, CCHC domain containing 9 [Source:HGNC Symbol;Acc:25424]
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:126849202..126859926(-)


>ENSCJAG00000019486
ATGACCAGGTGGGCACGAGTTAATACCACATATAACAAAAAACCCTTGCCTGCAACATCATGGGAGGACATGAAGAAGGA
ATCCTTTGAGGGAACAAGCCAAAACCTACCAAAGCATAAACGACTTGAAGCCAGTAGGCTATCCCTTAAAAATTATGCAC
CCCAAGCAAAACATAAAAAGAACAAAAAGAAAAAAGAGTACTTAAATGAAGATGTGAATGGATTCATGGAATACCTAAGA
CAGAATTCACAGATGGTTCACAATGGGCAAATTATAGCAACAGACAGTAAGGAAGTAAGGGAAGAAATTGCAGTTGCTTT
AAAGAAAGATAGTCGACGGGAAGGAAGAAGATTAAAAAGACAAGCAGCAAAGAAAAATGCAATGGTGTGTTTCCATTGTA
GAAAACCTGGTCATGGAATTGCAGATTGCCCTGCCGCCCTTGAAAATCAAGATATGGGCACTGGAATATGTTACAGGTGT
GGGTCCACAGAGCACGAAATAACCAAGTGTAAGGCTAAAGTAGACCCAGCTCTTGGTGAATTTCCTTTCGCAAAATGTTT
TGTTTGTGGAGAAATGGGGCACCTGTCTAGAGCTTGTCCTGATAATCCCAAAGGACTCTATGCTGATGGTGGTGGTTGCA
AACTTTGTGGCTCTGTGGAGCATTTAAAGAAAGATTGCCCGGAAAATCAGAATTCAGATCGAATGGTCACAGTTGGTCGC
TGGGTAAAGGGAATGAGTGCAGATTATGAAGAAATTTTGGATGCACCTAAACTGCAAAAACCCAAAACAAAAATACCTAA
AGTTGTTAATTTTTGA

Library Parental gene expression (RPM)
SRP051959_colon 5 .57 RPM
SRP051959_heart 10 .59 RPM
SRP051959_kidney 7 .94 RPM
SRP051959_liver 7 .52 RPM
SRP051959_lung 8 .20 RPM
SRP051959_lymph_node 8 .13 RPM
SRP051959_skeletal_muscle 9 .15 RPM
SRP051959_spleen 9 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005265 ortholog_one2many 1 retrogene
retro_btau_1095,
Canis familiaris ENSCAFG00000008703 ortholog_one2one 2 retrogenes
retro_cfam_1547, retro_cfam_675,
Choloepus hoffmanni ENSCHOG00000005268 ortholog_one2one 3 retrogenes
retro_chof_140, retro_chof_2143, retro_chof_268,
Echinops telfairi ENSETEG00000003838 ortholog_one2one 2 retrogenes
retro_etel_325, retro_etel_880,
Homo sapiens ENSG00000131732 ortholog_one2one 1 retrogene
retro_hsap_1799,
Gorilla gorilla ENSGGOG00000013790 ortholog_one2one 1 retrogene
retro_ggor_706,
Myotis lucifugus ENSMLUG00000001886 ortholog_one2one 1 retrogene
retro_mluc_799,
Macaca mulatta ENSMMUG00000020655 ortholog_one2many 1 retrogene
retro_mmul_797,
Mus musculus ENSMUSG00000021621 ortholog_one2one 1 retrogene
retro_mmus_1920,
Otolemur garnettii ENSOGAG00000002543 possible_ortholog 6 retrogenes
retro_ogar_1467, retro_ogar_2125, retro_ogar_2426, retro_ogar_2941, retro_ogar_3076, retro_ogar_459,
Pongo abelii ENSPPYG00000015604 ortholog_one2one 1 retrogene
retro_pabe_1476,
Pan troglodytes ENSPTRG00000017047 ortholog_one2one 2 retrogenes
retro_ptro_1205, retro_ptro_602,
Rattus norvegicus ENSRNOG00000014927 ortholog_one2one 2 retrogenes
retro_rnor_1164, retro_rnor_2160,
Sorex araneus ENSSARG00000008580 ortholog_one2one 2 retrogenes
retro_sara_216, retro_sara_78,
Sarcophilus harrisii ENSSHAG00000014504 ortholog_one2one 1 retrogene
retro_shar_734,
Ictidomys tridecemlineatus ENSSTOG00000001407 ortholog_one2one 2 retrogenes
retro_itri_422, retro_itri_696,
Tursiops truncatus ENSTTRG00000013796 ortholog_one2one 1 retrogene
retro_ttru_819,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_909 77.88 76.01
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2. retro_cjac_1236 88.42 69.74
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3. retro_cjac_2906 72.96 56.83
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4. retro_cjac_3528 84.75 64.21
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Download FASTA sequences of all ENSCJAG00000019486 retrocopies