Parental gene: | ZCCHC9, ENSPTRG00000017047 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 5:34110722..34122285(-) |
>ENSPTRG00000017047
ATGACCAGGTGGGCCCGAGTTAGTACCACATATAACAAGAGACCCTTGCCTGCAACATCATGGGAGGACATGAAGAAGGG
ATCCTTTGATGGAACAAGCCAAAACCTACCAAAGCGTAAACAACTTGAAGCCAATAGGCTATCCCTCAAAAATGATGCAC
CCCAAGCAAAACATAAAAAGAACAAAAAGAAAAAAGAGTACTTAAATGAAGATGTGAATGGATTCATGGAATACCTAAGA
CAGAATTCACAGATGGTTCACAGTGGGCAAATTATAGCAACAGACAGTGAGGAAGTAAGGGAAGAAATTGCAGTTGCTTT
AAAGAAAGACAGTCGACGGGAAGGAAGAAGATTAAAAAGACAAGCGGCAAAGAAAAATGCAATGGTGTGTTTCCATTGTA
GAAAACCTGGTCATGGAATTGCAGATTGCCCCGCCGCCCTTGAAAATCAAGACATGGGCACTGGGATATGTTACAGGTGT
GGGTCCACAGAGCACGAAATAACCAAGTGTAAGGCTAAAGTAGACCCGGCTCTTGGCGAATTTCCTTTTGCAAAATGTTT
TGTTTGTGGAGAAATGGGGCACCTGTCTAGATCTTGTCCTGATAATCCCAAAGGACTCTATGCTGATGGTGGCGGTTGCA
AACTTTGTGGCTCTGTGGAACATTTAAAGAAAGATTGCCCTGAAAGTCAGAATTCAGAGCGAATGGTCACAGTTGGTCGC
TGGGCAAAGGGAATGAGTGCAGACTATGAAGAAATTTTGGATGTACCTAAACCGCAAAAACCCAAAACAAAAATACCTAA
AGTTGTTAATTTTTGA
ATGACCAGGTGGGCCCGAGTTAGTACCACATATAACAAGAGACCCTTGCCTGCAACATCATGGGAGGACATGAAGAAGGG
ATCCTTTGATGGAACAAGCCAAAACCTACCAAAGCGTAAACAACTTGAAGCCAATAGGCTATCCCTCAAAAATGATGCAC
CCCAAGCAAAACATAAAAAGAACAAAAAGAAAAAAGAGTACTTAAATGAAGATGTGAATGGATTCATGGAATACCTAAGA
CAGAATTCACAGATGGTTCACAGTGGGCAAATTATAGCAACAGACAGTGAGGAAGTAAGGGAAGAAATTGCAGTTGCTTT
AAAGAAAGACAGTCGACGGGAAGGAAGAAGATTAAAAAGACAAGCGGCAAAGAAAAATGCAATGGTGTGTTTCCATTGTA
GAAAACCTGGTCATGGAATTGCAGATTGCCCCGCCGCCCTTGAAAATCAAGACATGGGCACTGGGATATGTTACAGGTGT
GGGTCCACAGAGCACGAAATAACCAAGTGTAAGGCTAAAGTAGACCCGGCTCTTGGCGAATTTCCTTTTGCAAAATGTTT
TGTTTGTGGAGAAATGGGGCACCTGTCTAGATCTTGTCCTGATAATCCCAAAGGACTCTATGCTGATGGTGGCGGTTGCA
AACTTTGTGGCTCTGTGGAACATTTAAAGAAAGATTGCCCTGAAAGTCAGAATTCAGAGCGAATGGTCACAGTTGGTCGC
TGGGCAAAGGGAATGAGTGCAGACTATGAAGAAATTTTGGATGTACCTAAACCGCAAAAACCCAAAACAAAAATACCTAA
AGTTGTTAATTTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 4 .45 RPM |
| SRP007412_cerebellum | 9 .68 RPM |
| SRP007412_heart | 11 .08 RPM |
| SRP007412_kidney | 18 .07 RPM |
| SRP007412_liver | 23 .57 RPM |
| SRP007412_testis | 42 .36 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000005265 | ortholog_one2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000008703 | ortholog_one2one | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000005268 | ortholog_one2one | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000019486 | ortholog_one2one | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000003838 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000131732 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000013790 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000001886 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020655 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000021621 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000002543 | possible_ortholog | 6 retrogenes | |
| Pongo abelii | ENSPPYG00000015604 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000014927 | ortholog_one2one | 2 retrogenes | |
| Sorex araneus | ENSSARG00000008580 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000014504 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000001407 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000013796 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_602 | 66.23 | 55.72 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1205 | 78.18 | 60.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000017047 retrocopies