RetrogeneDB ID: | retro_ptro_910 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 14:48502098..48502635(+) | ||
Located in intron of: | ENSPTRG00000006313 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOJ | ||
Ensembl ID: | ENSPTRG00000006424 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.56 % |
Parental protein coverage: | 83.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSY |
MLKCVVVGDGAVGKTCLLMS.ANDAFPEEYVPTVFDHY.V.VTVGGKQ.LLGLY.TAGQEDY..LRPLSY | |
Retrocopy | MLKCVVVGDGAVGKTCLLMSCANDAFPEEYVPTVFDHYTVSVTVGGKQYLLGLYNTAGQEDYDRLRPLSY |
Parental | PNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHG |
P.TDVFLICFSVVNPAS..NV.EEWVPELK...P.VP..LIG.QIDLRDDPKTLARL..MKEKP...E.G | |
Retrocopy | PMTDVFLICFSVVNPASFQNVREEWVPELKEYAPNVPFLLIGAQIDLRDDPKTLARLSNMKEKPICVEQG |
Parental | VKLAKAIGAQCYLECSALTQKGLKAVFDEAILTIFHPKK |
.KLAK.IGA.CY.ECSALTQKGLK.VFDEAI..I..PKK | |
Retrocopy | QKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .41 RPM | 2 .47 RPM |
SRP007412_cerebellum | 0 .43 RPM | 3 .73 RPM |
SRP007412_heart | 0 .44 RPM | 9 .65 RPM |
SRP007412_kidney | 0 .42 RPM | 6 .01 RPM |
SRP007412_liver | 0 .29 RPM | 4 .78 RPM |
SRP007412_testis | 0 .53 RPM | 2 .32 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1333 |
Pongo abelii | retro_pabe_1107 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000001761 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007948 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006424 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000018910 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000004859 | 2 retrocopies |