RetrogeneDB ID: | retro_hsap_1333 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:50066711..50067278(+) | ||
Located in intron of: | ENSG00000165501 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000258568 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOQ | ||
Ensembl ID: | ENSG00000119729 | ||
Aliases: | None | ||
Description: | ras homolog family member Q [Source:HGNC Symbol;Acc:17736] |
Percent Identity: | 96.3 % |
Parental protein coverage: | 92.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY |
MAHGPGALMLKCVVVGDGAVGKTCLLMS.ANDAFPEEYVPTVFDHY.VSVTVGGKQYLLGLY.TAGQEDY | |
Retrocopy | MAHGPGALMLKCVVVGDGAVGKTCLLMSCANDAFPEEYVPTVFDHYTVSVTVGGKQYLLGLYNTAGQEDY |
Parental | DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKE |
D.LRPLSYPMTDVFLICFSVVNPASFQNV.EEWVPELKEYAPNVPFLLIG.QIDLRDDPKTLARL.DMKE | |
Retrocopy | DHLRPLSYPMTDVFLICFSVVNPASFQNVREEWVPELKEYAPNVPFLLIGAQIDLRDDPKTLARLSDMKE |
Parental | KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHT |
KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHT | |
Retrocopy | KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .99 RPM | 155 .90 RPM |
bodymap2_adrenal | 0 .29 RPM | 75 .55 RPM |
bodymap2_brain | 0 .19 RPM | 72 .38 RPM |
bodymap2_breast | 1 .01 RPM | 302 .16 RPM |
bodymap2_colon | 0 .54 RPM | 144 .05 RPM |
bodymap2_heart | 0 .24 RPM | 302 .02 RPM |
bodymap2_kidney | 0 .19 RPM | 77 .34 RPM |
bodymap2_liver | 0 .06 RPM | 19 .35 RPM |
bodymap2_lung | 0 .42 RPM | 151 .11 RPM |
bodymap2_lymph_node | 0 .33 RPM | 86 .67 RPM |
bodymap2_ovary | 0 .25 RPM | 84 .18 RPM |
bodymap2_prostate | 0 .35 RPM | 204 .17 RPM |
bodymap2_skeletal_muscle | 0 .75 RPM | 148 .10 RPM |
bodymap2_testis | 0 .89 RPM | 70 .38 RPM |
bodymap2_thyroid | 0 .38 RPM | 100 .73 RPM |
bodymap2_white_blood_cells | 0 .98 RPM | 84 .19 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF001VKU | POLR2A | 14:50065189..50066060 |
ENCFF002CFW | POLR2A | 14:50065146..50066117 |
ENCFF002CFW | POLR2A | 14:50066532..50066962 |
ENCFF002CFX | POLR2A | 14:50065159..50066111 |
ENCFF002CFX | POLR2A | 14:50066684..50066877 |
ENCFF002CGN | POLR2A | 14:50065440..50066115 |
ENCFF002CHO | POLR2A | 14:50064879..50066217 |
ENCFF002CHO | POLR2A | 14:50066354..50066999 |
ENCFF002CIH | POLR2A | 14:50065534..50066006 |
ENCFF002CIH | POLR2A | 14:50065534..50066008 |
ENCFF002CIO | POLR2A | 14:50065102..50066147 |
ENCFF002CJE | POLR2A | 14:50065093..50066211 |
ENCFF002CJZ | POLR2A | 14:50065084..50066254 |
ENCFF002CJZ | POLR2A | 14:50066735..50066987 |
ENCFF002CKX | POLR2A | 14:50065176..50066083 |
ENCFF002CLM | POLR2A | 14:50065463..50066003 |
ENCFF002CMI | POLR2A | 14:50065157..50066203 |
ENCFF002COJ | POLR2A | 14:50065464..50065900 |
ENCFF002CPG | POLR2A | 14:50065588..50065930 |
ENCFF002CPH | POLR2A | 14:50065527..50065917 |
ENCFF002CQA | POLR2A | 14:50065619..50065901 |
ENCFF002CQC | POLR2A | 14:50065496..50065994 |
ENCFF002CQC | POLR2A | 14:50065496..50065999 |
ENCFF002CQE | POLR2A | 14:50065146..50066100 |
ENCFF002CQG | POLR2A | 14:50065513..50065882 |
ENCFF002CQI | POLR2A | 14:50065498..50065980 |
ENCFF002CQK | POLR2A | 14:50065108..50066097 |
ENCFF002CQM | POLR2A | 14:50065158..50066080 |
ENCFF002CQO | POLR2A | 14:50065115..50066071 |
ENCFF002CRK | POLR2A | 14:50065450..50065974 |
ENCFF002CSY | POLR2A | 14:50064939..50066237 |
ENCFF002CUP | POLR2A | 14:50065755..50065970 |
ENCFF002CUP | POLR2A | 14:50066472..50066788 |
ENCFF002CUQ | POLR2A | 14:50065579..50066054 |
ENCFF002CVF | POLR2A | 14:50065667..50066083 |
ENCFF002CVJ | POLR2A | 14:50065658..50066022 |
ENCFF002CXM | POLR2A | 14:50065464..50065954 |
ENCFF002CXN | POLR2A | 14:50065473..50065969 |
ENCFF002CXO | POLR2A | 14:50065597..50065824 |
ENCFF002CXP | POLR2A | 14:50065587..50065871 |
ENCFF002CXR | POLR2A | 14:50065502..50065934 |
ENCFF002CZC | POLR2A | 14:50065137..50066209 |
ENCFF002CZD | POLR2A | 14:50065167..50066174 |
ENCFF002CZQ | POLR2A | 14:50065510..50065880 |
ENCFF002CZW | POLR2A | 14:50065156..50066154 |
ENCFF002CZY | POLR2A | 14:50065109..50066022 |
ENCFF002DAE | POLR2A | 14:50065567..50065877 |
ENCFF002DAH | POLR2A | 14:50065589..50065873 |
ENCFF002DAK | POLR2A | 14:50065463..50065963 |
ENCFF002DAS | POLR2A | 14:50065460..50065936 |
ENCFF002DAV | POLR2A | 14:50065723..50065910 |
ENCFF002DAY | POLR2A | 14:50065411..50066047 |
ENCFF002DBB | POLR2A | 14:50065598..50065798 |
ENCFF002DBE | POLR2A | 14:50065527..50065877 |
ENCFF002DBO | POLR2A | 14:50065143..50066035 |
ENCFF002DBO | POLR2A | 14:50066635..50067019 |
ENCFF002DBP | POLR2A | 14:50065473..50065974 |
ENCFF002DBP | POLR2A | 14:50066658..50066988 |
ENCFF002DBQ | POLR2A | 14:50065550..50065920 |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_910 |
Pongo abelii | retro_pabe_1107 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000549 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000000685 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000015226 | 1 retrocopy | |
Homo sapiens | ENSG00000070831 | 6 retrocopies | |
Homo sapiens | ENSG00000119729 | 3 retrocopies |
retro_hsap_1333 , retro_hsap_2158, retro_hsap_2316,
|
Homo sapiens | ENSG00000136238 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000004327 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009124 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000033272 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012439 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015415 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008439 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002837 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .34 RPM |
CEU_NA11843 | 0 .43 RPM |
CEU_NA11930 | 0 .52 RPM |
CEU_NA12004 | 0 .46 RPM |
CEU_NA12400 | 0 .46 RPM |
CEU_NA12751 | 0 .51 RPM |
CEU_NA12760 | 0 .67 RPM |
CEU_NA12827 | 0 .61 RPM |
CEU_NA12872 | 0 .65 RPM |
CEU_NA12873 | 0 .73 RPM |
FIN_HG00183 | 0 .60 RPM |
FIN_HG00277 | 0 .44 RPM |
FIN_HG00315 | 0 .39 RPM |
FIN_HG00321 | 0 .66 RPM |
FIN_HG00328 | 0 .59 RPM |
FIN_HG00338 | 0 .30 RPM |
FIN_HG00349 | 0 .43 RPM |
FIN_HG00375 | 0 .46 RPM |
FIN_HG00377 | 0 .35 RPM |
FIN_HG00378 | 0 .83 RPM |
GBR_HG00099 | 0 .55 RPM |
GBR_HG00111 | 0 .45 RPM |
GBR_HG00114 | 0 .55 RPM |
GBR_HG00119 | 0 .53 RPM |
GBR_HG00131 | 0 .43 RPM |
GBR_HG00133 | 0 .34 RPM |
GBR_HG00134 | 0 .57 RPM |
GBR_HG00137 | 0 .44 RPM |
GBR_HG00142 | 0 .58 RPM |
GBR_HG00143 | 0 .70 RPM |
TSI_NA20512 | 0 .51 RPM |
TSI_NA20513 | 0 .73 RPM |
TSI_NA20518 | 0 .42 RPM |
TSI_NA20532 | 0 .78 RPM |
TSI_NA20538 | 1 .24 RPM |
TSI_NA20756 | 0 .61 RPM |
TSI_NA20765 | 0 .66 RPM |
TSI_NA20771 | 0 .57 RPM |
TSI_NA20786 | 0 .24 RPM |
TSI_NA20798 | 0 .37 RPM |
YRI_NA18870 | 0 .81 RPM |
YRI_NA18907 | 0 .35 RPM |
YRI_NA18916 | 0 .80 RPM |
YRI_NA19093 | 0 .39 RPM |
YRI_NA19099 | 0 .45 RPM |
YRI_NA19114 | 0 .60 RPM |
YRI_NA19118 | 0 .70 RPM |
YRI_NA19213 | 0 .88 RPM |
YRI_NA19214 | 0 .79 RPM |
YRI_NA19223 | 0 .72 RPM |