RetrogeneDB ID:

retro_pvam_541

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_3659:3680..4405(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:EIF4E2
Ensembl ID:ENSPVAG00000007494
Aliases:None
Description:eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293]


Retrocopy-Parental alignment summary:






>retro_pvam_541
AACAAGTTCGACGCATTGAAAGATGAAGACAGCGGGGCCATGATCAGAAGGAAGAAAAAGGCACACAGAAAGATGGTGAG
AAGGAAAAAATGGAACGAGACAAGAGTCAGAGCAGCAGCCAGAGGAAGGCTGTTGTCCCTGGACCAGCAAAGCATCCCCT
ACAGTACAACTACACTTTCTGGCACTCCAGGAGAACCCCCCGCTGGTCCCACCAGCTCACAGAGCTACAAGCAGACTATT
AAACTGATGGGCGCTTTTGCCACTGTGGTATGTCCTGGGCACCTGATAGCCAAATGGTATGTCCTGGGGACCTGATAGGC
CACAACAACTTCTATCTCTTCAAAGGAGGAATTAAAACCATGTGGGAGGATGATGCAAATAAAAATGGTGGCAAGTGGAA
TACTTGGCTAAAAAAGGGCTTGGACTCCTGTTGCTACGAGAATCTCATCCTGGCCATGTTGGAGCAGTTCATGGTTGTGG
GGGATATCTTTGGGGCTGTGGTCTCCAACCACTTTCAGGAAAACATTCTTTCCATATGGAATAAGACTGCCAGCGACCAA
GCCACCACAGCACGAATCCAGGATACGCTTCGGCGAGTGCTTAACCTACCTCCCAACACCATTTTGGAATACAAAACCCA
CAGTGACAGCATCAAAATGCCAGGCAGCCTGGGCTCCCAAAAACTCCTTTTCCAAAATCTCTAGAAGCTGCGGTTGAATG
TGCCA

ORF - retro_pvam_541 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.02 %
Parental protein coverage: 99.18 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalNKFDALKDDDSG-DHDQNEENSTQKDGEKEKMERDKSQSISKRKAVVPGPAEHPLQYNYTFWYSRRT-PG
NKFDALKD.DSG..HDQ.EE..TQKDGEKEKMERDKSQS.S.RKAVVPGPA.HPLQYNYTFW.SRRT.P.
RetrocopyNKFDALKDEDSG<GHDQKEEKGTQKDGEKEKMERDKSQSSSQRKAVVPGPAKHPLQYNYTFWHSRRT>PA
ParentalRPTSSQSYEQNIKQIGTFASV-EQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRL
.PTSSQSY.Q.IK..G.FA.V....W...S.MV.PGDL.GH..F.LFK.GIK.MWEDDANKNGGKW...L
RetrocopyGPTSSQSYKQTIKLMGAFATV<GMSWAPDSQMVCPGDLIGHNNFYLFKGGIKTMWEDDANKNGGKWNTWL
ParentalRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPN
.KGL.S.C.ENLILAML.EQFMV...I.GAVVS..FQE.I.SIWNKTASDQATTARI.DTLRRVLNLPPN
RetrocopyKKGLDSCCYENLILAML-EQFMVVGDIFGAVVSNHFQENILSIWNKTASDQATTARIQDTLRRVLNLPPN
ParentalTIMEYKTHTDSIKTPGRLGPQRLLFQNLWKPRLNVP
TI.EYKTH.DSIK.PG.LG.Q.LLFQNL.K.RLNVP
RetrocopyTILEYKTHSDSIKMPGSLGSQKLLFQNL*KLRLNVP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Pteropus vampyrus was not studied using RNA-Seq expression data.
Pteropus vampyrus was not studied using ChIP-Seq data.
Pteropus vampyrus was not studied using EST data.
Pteropus vampyrus was not studied using FANTOM5 data.
retro_pvam_541 was not experimentally validated.

Retrocopy orthology:
Pteropus vampyrus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 16 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000113281 retrocopy
Callithrix jacchus ENSCJAG000000137862 retrocopies
Macropus eugenii ENSMEUG000000155192 retrocopies
Microcebus murinus ENSMICG000000150822 retrocopies
Myotis lucifugus ENSMLUG000000112691 retrocopy
Monodelphis domestica ENSMODG000000026801 retrocopy
Otolemur garnettii ENSOGAG000000091551 retrocopy
Pteropus vampyrus ENSPVAG00000007494 4 retrocopies
Tursiops truncatus ENSTTRG000000109272 retrocopies



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