RetrogeneDB ID: retro_meug_445

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold11517:4667..5122(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EIF4E2
• Ensembl ID: ENSMEUG00000015519
• Aliases: None
• Description: eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293]

Sequence

>retro_meug_445
AATAAGTTCGACTTCTTGAAGGATGATGACAGCGGGGACCATGACAAGAATGACAAAAATGAAAGGAACAGCACACAGAA
AGACGGTGAGAACGAAAAAGTAAGATCAGAAACAAGAGGAAGGCTGTTATCCCTGGGCCCTCAGAACACCCACTGCAGTA
CACCAACACTTTTTCGTACTCTCAGAGAACACCGGACCAGCCGACCAGCTCACAGAGCTATGAGAAGAATATTAAGCAGA
TTGGCACATTCCCTTCTATCAAGTAGCTCTGGAAGTTTTATAGCCACATGGTATGTCCTGGGGATCTGACAGGCCACAGT
CACTTCCATCTCTTCAAAGATGGAATCAAACATATGTGGGAGGATGATGCAAATAAAAATGGTGACAAATGGATTATTCG
ACTCCACAAGGGCTTAGCATTCCAGTGCTGGAAGAACCTTTTACTTGCCATGTTG

Alignment

ORF - retro_meug_445 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.32 %
• Parental protein coverage: 62.86 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  NKFDALKDDDSGDHDQNEENSTQKDGEKEKSERDKSQSS-NKRKAVVPGPSEHPLQYNYTFWYSRRTPGR
          NKFD.LKDDDSGDHD.N..............E..K..S..NKRKAV.PGPSEHPLQY..TF.YS.RTP..
Retrocopy NKFDFLKDDDSGDHDKN--DKNERNSTQKDGENEKVRSE<NKRKAVIPGPSEHPLQYTNTFSYSQRTPDQ

Parental  PTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRK
          PTSSQSYE.NIKQIGTF.S....W.FYSHMV.PGDLTGHS.FHLFK.GIK.MWEDDANKNG.KWIIRL.K
Retrocopy PTSSQSYEKNIKQIGTFPSIK*LWKFYSHMVCPGDLTGHSHFHLFKDGIKHMWEDDANKNGDKWIIRLHK

Parental  GLASRCWENLILAML
          GLA..CW.NL.LAML
Retrocopy GLAFQCWKNLLLAML

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_445 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_445 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000011328	1 retrocopy	retro_cfam_183,
Callithrix jacchus	ENSCJAG00000013786	2 retrocopies	retro_cjac_1061, retro_cjac_2717,
Macropus eugenii	ENSMEUG00000011104	3 retrocopies	retro_meug_2087, retro_meug_2114, retro_meug_428,
Macropus eugenii	ENSMEUG00000015519	2 retrocopies	retro_meug_445 , retro_meug_644,
Microcebus murinus	ENSMICG00000015082	2 retrocopies	retro_mmur_806, retro_mmur_975,
Myotis lucifugus	ENSMLUG00000011269	1 retrocopy	retro_mluc_60,
Monodelphis domestica	ENSMODG00000002680	1 retrocopy	retro_mdom_1717,
Otolemur garnettii	ENSOGAG00000009155	1 retrocopy	retro_ogar_104,
Pteropus vampyrus	ENSPVAG00000007494	4 retrocopies	retro_pvam_1147, retro_pvam_340, retro_pvam_541, retro_pvam_720,
Tursiops truncatus	ENSTTRG00000010927	2 retrocopies	retro_ttru_1799, retro_ttru_1920,