RetrogeneDB ID: retro_ogar_104

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873529.1:14538483..14539221(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000031078
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: EIF4E2
• Ensembl ID: ENSOGAG00000009155
• Aliases: None
• Description: eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293]

Sequence

>retro_ogar_104
ATGAACAACAAGTTCGACGCCTTGAAAGATGATGACAGTGGGGACCATGATCAGAATGAAGAAAACAGCACACAGAAAGA
TGGTGAGAAGGAAAAAACGGAACGAGACAAGAATCAGAACAGCAGCAAAAGGAAGGCTGTTGTCCCTGGACCAGCAGAGC
ACCCGCTGCAGTACAACTACACTTTCTGGTATTCCAGGAGAACCCCCGGCCGTCCTCCCAGCTCACAAAGCTATGAACAG
AATATCAAACAAATTGGCACCTTTGCCTCTGTGGAGCAGTTCTGGAGGTTTTACAGCCACATGGTACGTCCTGGGGACCT
GACAGGCCACAGTGACTTCCATCTCTTCAAAGAAGGAATTAAACCTATGTGGGAGGATGATGCAAATAAAAACGGTGGCA
AGTGGATTATTCGGTTGCGAAAGGGCTTGGCCTCCCGTTGCTGGGAGAATCTCATCCTGGCCGTGTTGGGGGGACAGTTC
ATGGTGGGAGAGGAGATCCGTGGGGCTGTGGTCTCTGTCCGTTTTCAGGAGGACATTATTTCAATATGGAATAAGACTGC
CAGTGACCAAGCAACCACAGCCCGCATCTGGGATACGCTTCGGCGAGTGCTTAACCTACCTCCCAACACCGTTATGGAAT
ACAAAACTCACACCGACAGCATCAAAATGCCAGGCAGGCTGGGCCCCCAAAGGCTCCTTTTTCAAAATCTCTGGAAGCCG
TGGTTGAATGTGGCATGA

Alignment

ORF - retro_ogar_104 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.99 %
• Parental protein coverage: 72.33 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SLKDDDSGDHDQNEENSTQKDGEKEKTERDKNQNSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQ
          .LKDDDSGDHDQNEENSTQKDGEKEKTERDKNQNSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRP.SSQ
Retrocopy ALKDDDSGDHDQNEENSTQKDGEKEKTERDKNQNSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPPSSQ

Parental  SYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASR
          SYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASR
Retrocopy SYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASR

Parental  CWENLILAI
          CWENLILA.
Retrocopy CWENLILAV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_104 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 28 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000010598	2 retrocopies	retro_btau_1232, retro_btau_1498,
Canis familiaris	ENSCAFG00000011328	1 retrocopy	retro_cfam_183,
Choloepus hoffmanni	ENSCHOG00000013109	3 retrocopies	retro_chof_1963, retro_chof_369, retro_chof_567,
Callithrix jacchus	ENSCJAG00000013786	2 retrocopies	retro_cjac_1061, retro_cjac_2717,
Dasypus novemcinctus	ENSDNOG00000016877	1 retrocopy	retro_dnov_1374,
Echinops telfairi	ENSETEG00000007930	1 retrocopy	retro_etel_1385,
Macropus eugenii	ENSMEUG00000015519	2 retrocopies	retro_meug_445, retro_meug_644,
Microcebus murinus	ENSMICG00000015082	2 retrocopies	retro_mmur_806, retro_mmur_975,
Myotis lucifugus	ENSMLUG00000011269	1 retrocopy	retro_mluc_60,
Monodelphis domestica	ENSMODG00000002680	1 retrocopy	retro_mdom_1717,
Otolemur garnettii	ENSOGAG00000001131	1 retrocopy	retro_ogar_259,
Otolemur garnettii	ENSOGAG00000009155	1 retrocopy	retro_ogar_104 ,
Pteropus vampyrus	ENSPVAG00000007494	4 retrocopies	retro_pvam_1147, retro_pvam_340, retro_pvam_541, retro_pvam_720,
Sarcophilus harrisii	ENSSHAG00000013108	1 retrocopy	retro_shar_101,
Ictidomys tridecemlineatus	ENSSTOG00000003508	3 retrocopies	retro_itri_1270, retro_itri_1370, retro_itri_573,
Tursiops truncatus	ENSTTRG00000010927	2 retrocopies	retro_ttru_1799, retro_ttru_1920,