RetrogeneDB ID: retro_ttru_1799

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_92173:30053..30685(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EIF4E2
• Ensembl ID: ENSTTRG00000010927
• Aliases: None
• Description: eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293]

Sequence

>retro_ttru_1799
ATGAGCAACAAGTTCGATGCATTGAAAGATGAGGACAGTGGGGACCACGATCAGAATGAAGAAAACAGCACACAGAAAGA
TGGTGAGAAGGAAAAAACGGAACGAGACTAGGCTCAGAGCAGCAGCAAGAGGAAGGCTGTTGTCCCTGGGCCAGCAGAGC
ACCCCCTGCAGTATAACTACACTTTCTGGTACTCCAGGAGAACCCTTGGCCGTCCTACCAGCTCACAGAGCTACGAACAG
AATATCAAACAGATTGGCATCTTTGCCTCTGTGGAGCAGTTCTGGAGGTTTTACAGCCACATGGTACGGTCCGGGGACCT
GACAGGCCACAGTGACATCCATCTCTTCAAAGAAGGAATTAAACCCATGTGGGAGGATGATGCAAATAAAAATGGTGGCA
GTGGATTATTCGGCCATGGAAGGGCTTGGCATCCCGTTGCTGGGAGACTCTCATCCTGGCCATGTTGGGGGAACAGTCCA
TGGTTGGGGAGGAGATCTGTGGGGCTGTGGTCTCTGTCCGGTTTCAGCAGGACATTATTTCAATATGGAATAAGAATGAC
AGCGACCAAGCCACCACAGCCCGCATCCGGGATACGCTTCGGCGAGTGCTCAACCTACCTCCCAACACCATT

Alignment

ORF - retro_ttru_1799 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.51 %
• Parental protein coverage: 86.12 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTERDRSQSSSKRKAVVLGPAEHPLQYNYTFWYSRRTPG
          M.NKFDALKD.DSGDHDQNEENSTQKDGEKEKTERD..QSSSKRKAVV.GPAEHPLQYNYTFWYSRRT.G
Retrocopy MSNKFDALKDEDSGDHDQNEENSTQKDGEKEKTERD*AQSSSKRKAVVPGPAEHPLQYNYTFWYSRRTLG

Parental  RPTSSQSYEQNIKQIGTFASVEQFWRFYSHMVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGG-KWIIRL
          RPTSSQSYEQNIKQIG.FASVEQFWRFYSHMVR.GDLTGHSD.HLFKEGIKPMWEDDANKNGG..WIIR.
Retrocopy RPTSSQSYEQNIKQIGIFASVEQFWRFYSHMVRSGDLTGHSDIHLFKEGIKPMWEDDANKNGG<QWIIRP

Parental  RKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPN
          .KGLASRCWE.LILAMLGEQ.MVGEEICGAVVSVRFQ.DIISIWNK..SDQATTARIRDTLRRVLNLPPN
Retrocopy WKGLASRCWETLILAMLGEQSMVGEEICGAVVSVRFQQDIISIWNKNDSDQATTARIRDTLRRVLNLPPN

Parental  TI
          TI
Retrocopy TI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1799 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1799 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 10 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000011328	1 retrocopy	retro_cfam_183,
Callithrix jacchus	ENSCJAG00000013786	2 retrocopies	retro_cjac_1061, retro_cjac_2717,
Macropus eugenii	ENSMEUG00000015519	2 retrocopies	retro_meug_445, retro_meug_644,
Microcebus murinus	ENSMICG00000015082	2 retrocopies	retro_mmur_806, retro_mmur_975,
Myotis lucifugus	ENSMLUG00000011269	1 retrocopy	retro_mluc_60,
Monodelphis domestica	ENSMODG00000002680	1 retrocopy	retro_mdom_1717,
Otolemur garnettii	ENSOGAG00000009155	1 retrocopy	retro_ogar_104,
Pteropus vampyrus	ENSPVAG00000007494	4 retrocopies	retro_pvam_1147, retro_pvam_340, retro_pvam_541, retro_pvam_720,
Tursiops truncatus	ENSTTRG00000004206	2 retrocopies	retro_ttru_1591, retro_ttru_592,
Tursiops truncatus	ENSTTRG00000010927	2 retrocopies	retro_ttru_1799 , retro_ttru_1920,