RetrogeneDB ID: | retro_rnor_2496 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 7:6462123..6462629(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2g1 | ||
Ensembl ID: | ENSRNOG00000010041 | ||
Aliases: | Ube2g1, Ubc7 | ||
Description: | Ubiquitin-conjugating enzyme E2 G1 [Source:UniProtKB/Swiss-Prot;Acc:P62255] |
Percent Identity: | 79.89 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MTELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLT-FPKDYPLR- |
MTEL.S.LLLRRQ.AELNKN.VEG.SAGLIDDN.LYRW.VLII.PPDTL..GG.FKAHL..FPKDYPL.. | |
Retrocopy | MTEL*SLLLLRRQQAELNKNTVEGISAGLIDDNVLYRWQVLIICPPDTLCVGGIFKAHLI<FPKDYPLQ< |
Parental | PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISML-ADPNGDSPA |
...MKFITEIWHPNVDK.G.VCISILHE..EDKYGYEK.EE.WLP.HTVETIMI.V.SML.ADPNGDSPA | |
Retrocopy | VSYMKFITEIWHPNVDKIGNVCISILHEFEEDKYGYEKAEE*WLPVHTVETIMIIVSSML<ADPNGDSPA |
Parental | NVDAAKEWREDRNGEFKRKVA-RCVRKSQETAFE |
NVDA..EWREDRN.EF.R.VA..CVRKSQETAFE | |
Retrocopy | NVDAVTEWREDRNAEFQRRVA<HCVRKSQETAFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 41 .70 RPM |
SRP017611_kidney | 0 .00 RPM | 48 .08 RPM |
SRP017611_liver | 0 .00 RPM | 30 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014433 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011801 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000009498 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009769 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002118 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000000248 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008795 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008348 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000010041 | 3 retrocopies |
retro_rnor_2496 , retro_rnor_317, retro_rnor_970,
|
Rattus norvegicus | ENSRNOG00000010727 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000002399 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006117 | 1 retrocopy | |
Tetraodon nigroviridis | ENSTNIG00000008566 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000005995 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000595 | 1 retrocopy | |
Drosophila melanogaster | FBgn0058045 | 1 retrocopy |