RetrogeneDB ID: | retro_rnor_2869 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:124962161..124962526(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Pfdn6 | ||
Ensembl ID: | ENSRNOG00000000473 | ||
Aliases: | Pfdn6, Ke2 | ||
Description: | prefoldin 6 [Source:RefSeq peptide;Acc:NP_001158190] |
Percent Identity: | 60.16 % |
Parental protein coverage: | 96.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | AELIQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGE |
AE.I.KKLQGE..K.QQLQ.DLSK..SGR.KLE.QL.E.NI.KEE.ALL.GS.V.FKLLGP.LVK.E.GE | |
Retrocopy | AEMI*KKLQGEAVKCQQLQDDLSKAVSGRPKLETQLIEKNIMKEEVALLHGSHVFFKLLGPMLVKEEPGE |
Parental | A-RATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQNAKA |
.....VGK.L..ITA.IK.YESQL.....Q.EQ.RE....LQ......Q..KA | |
Retrocopy | I<SSHVGKGLGNITAQIKCYESQLWYIK*QLEQWREHSSPLQ*DLWVVQAVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 33 .36 RPM |
SRP017611_kidney | 0 .07 RPM | 21 .98 RPM |
SRP017611_liver | 0 .07 RPM | 11 .56 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001576 | 2 retrocopies | |
Bos taurus | ENSBTAG00000010723 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000019520 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000013828 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016778 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000922 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024309 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010559 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000028341 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000000983 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000000473 | 2 retrocopies |
retro_rnor_2216, retro_rnor_2869 ,
|
Sorex araneus | ENSSARG00000006330 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000013280 | 1 retrocopy |