RetrogeneDB ID: | retro_rnor_67 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:19767557..19767845(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000032840 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSRNOG00000003670 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 92.55 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AKERAKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETD |
A.E..KEGVKTENNDHINLK..GQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRF.FDGQPINETD | |
Retrocopy | ADEKPKEGVKTENNDHINLKAVGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFEFDGQPINETD |
Parental | TPAQLEMEDEDTIDVFQQQTGGVY |
TPAQLEMEDEDTIDVF.QQTGGVY | |
Retrocopy | TPAQLEMEDEDTIDVFRQQTGGVY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 18 .12 RPM | 28 .61 RPM |
SRP017611_kidney | 11 .79 RPM | 21 .70 RPM |
SRP017611_liver | 3 .77 RPM | 6 .66 RPM |